Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq27981 113 4e-20 seq33118 102 7e-17 seq2112 93.3 4e-14 seq23075 86.0 5e-12 >seq27981 Length=93525 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 21163 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 21222 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || |||||||| ||| Sbjct 21223 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 21282 Query 4692 AC 4693 || Sbjct 21283 AC 21284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 23105 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 23164 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 23165 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 23208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 24248 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 24307 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 24308 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 24351 >seq33118 Length=85100 Score = 102 bits (112), Expect = 7e-17 Identities = 151/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || |||||||| ||||| || || | ||||| ||||||||||| || |||||| | Sbjct 46706 GTGAAAACCGACATTCAGATAGCTCTTCCTTCTGGGTGCTACGGGAGAGAAGCTCCACGT 46765 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 |||| |||||| ||||| || | || || || || |||| |||||| ||| ||| Sbjct 46766 TCTGACTTGGCA---AAACATTTCACAGAGGTCGGAGCTGGTGCCATAGATGAAGATTAT 46822 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGA-AAAATCATACAGTATAAAAAA 31950 |||||| ||||| |||| |||||||||||| | | |||| | || | ||||| Sbjct 46823 AGAGGAGTTGTTGGTGTTGTTCTGTTTAATTTTGCAAAGAAAAGTTTGAAG--TCAAAAA 46880 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||| ||| | | || ||||| ||| | ||| Sbjct 46881 GGGTGATTGAATTGCACAACTTATTAGTGAA 46911 >seq2112 Length=273871 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || || ||||| ||| Sbjct 171054 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATA 170995 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 170994 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 170936 >seq23075 Length=64906 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 31773 TTAAAACCGATATTCAAAT--TTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 |||||||| | ||||| || ||||| ||||| |||||||| ||| || ||||||| Sbjct 20226 TTAAAACCAACATTCAGATAGTTCTT--CCTTCTGGGTGCTATGGAAGAGTAGCTCCACA 20283 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 | | | | || ||| ||| | || ||||| | ||| |||||||| || ||| Sbjct 20284 TTTTCGCTAAGCTACAAAATACTACACAGATGTGGGAGATGGTATTATAGATGAAGGCTA 20343 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAA 31933 | ||||||| ||||| |||| ||||||||||||| ||||| Sbjct 20344 TGGAGGAAATGTTGGTGTTGTAATGTTTAATTTTGGCAAAAAA 20386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422692362085607