Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq39760 132 7e-26 seq2343 114 2e-20 seq27981 111 2e-19 seq33118 93.3 6e-14 seq4915 87.8 2e-12 >seq39760 Length=42403 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 28010 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 28069 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 28070 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 28129 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 28130 TTTCTTATACCAT 28142 >seq2343 Length=226264 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| ||||||||||| || ||| Sbjct 4641 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTTTCAGAAAGAAGGTTG 4700 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || |||||||| || | ||| | ||||||| Sbjct 4701 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 4760 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 4761 ATGTGTTGTGGTCTTTCAGCC 4781 >seq27981 Length=93525 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | ||| || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 21163 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 21222 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 21223 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 21281 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| ||||| |||| || | ||| ||| ||| | || ||||| |||||||| | Sbjct 19547 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 19606 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 19607 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 19666 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 19667 CATAAAGTCAAATGGATT 19684 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 23094 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 23153 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | ||||| || ||||| || || Sbjct 23154 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 23208 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 24237 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 24296 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | ||||| || ||||| || || Sbjct 24297 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 24351 >seq33118 Length=85100 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || || || ||| ||| | | |||||||| |||||| || ||| |||||| Sbjct 46992 TCCAGTAGAACCGAAACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAGCTTGAACTTCC 46935 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | || ||||| || |||| ||||||| | || Sbjct 46934 TCAATTTCTGGGTAAAATATCCATTCACTAATAAGTTGTGCAATTCAATCACCCTTTTTG 46875 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| | | ||| | ||||| || |||| |||||||||||| Sbjct 46874 ACTTCAAACTTTTCTTTGCAAA-ATTAAACAGAACAACACCAACAACTCCTCTATAATCT 46816 Query 46054 TCATCTATTACTCCCCCTCCCACATC 46079 |||||||| | || |||| || || Sbjct 46815 TCATCTATGGCACCAGCTCCGACCTC 46790 >seq4915 Length=70199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45872 TCAGTCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTT 45931 ||| ||||||||| ||||| ||| | || ||||| || ||||| | ||| || | Sbjct 49216 TCATTCCAGTGGAACCAAAACCTCCTGAATCCCTTTCGGTGTTATCTAAAACTTGAACAT 49275 Query 45932 CCTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTAT 45991 ||| | ||| ||||| |||| ||| | | || || || || || ||||||| | | Sbjct 49276 CCTCTATTTCAAGATAAAATATCTGTTCACAAATGAGCTGTGCAGTTTGATCACCCTTTT 49335 Query 45992 TTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051 | | |||||| | ||||| || ||| || | || |||| | |||||||||| Sbjct 49336 TGACTTCAAAGCTTTCTTTGTCAAAATTACATAGTACAACATCAATGCTTCCTCTATAAT 49395 Query 46052 CTTCATCTATTACTCCCCCTCCCACA 46077 |||||||||| || || |||||||| Sbjct 49396 CTTCATCTATGACACCAGCTCCCACA 49421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687399273358560