Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39760 136 6e-27 seq2343 111 2e-19 seq27981 107 3e-18 seq2112 87.8 3e-12 seq4915 84.2 3e-11 >seq39760 Length=42403 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 28010 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 28069 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 28070 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 28129 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 28130 TTTCTTATACCAT 28142 >seq2343 Length=226264 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | || || ||||| ||||| || || || || Sbjct 8936 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAGGATG 8995 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || |||||||| | | Sbjct 8996 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCAGT 9055 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || | |||| ||||| || |||||||||| Sbjct 9056 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 9101 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| ||||||||||| || ||| Sbjct 4641 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTTTCAGAAAGAAGGTTG 4700 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || |||||||| |||| || | ||||||| Sbjct 4701 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 4760 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || |||| ||| Sbjct 4761 ATGTGTTGTGGTCTTTC 4777 >seq27981 Length=93525 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | ||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 21163 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 21222 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| |||||||| || || || || || Sbjct 21223 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 21282 Query 46774 AC 46775 || Sbjct 21283 AC 21284 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | | |||||| |||||||| | Sbjct 19547 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 19606 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 19607 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 19666 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 19667 CATAAAGTCAAATGGATT 19684 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 23104 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23163 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 23164 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 23209 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 24247 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 24306 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 24307 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 24352 >seq2112 Length=273871 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||||| ||||||||| ||||| || ||| | Sbjct 166079 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGG 166020 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 166019 GTACTGGATTGGAAAGATGACAAATC 165994 >seq4915 Length=70199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 44359 TCAATCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTT 44418 ||| ||| || || ||||| ||| | || || | ||| |||||| | ||| || | Sbjct 49216 TCATTCCAGTGGAACCAAAACCTCCTGAATCCCTTTCGGTGTTATCTAAAACTTGAACAT 49275 Query 44419 CCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTAT 44478 |||||| ||| ||||| |||| ||| | | || || || || || |||||| | | Sbjct 49276 CCTCTATTTCAAGATAAAATATCTGTTCACAAATGAGCTGTGCAGTTTGATCACCCTTTT 49335 Query 44479 TTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAAT 44538 | | || |||| | ||||| || ||| | | || ||||| | || ||||||| Sbjct 49336 TGACTTCAAAGCTTTCTTTGTCAAAATTACATAGTACAACATCAATGCTTCCTCTATAAT 49395 Query 44539 CTTCATCTATTACTCCACCTCCCACA 44564 |||||||||| || ||| |||||||| Sbjct 49396 CTTCATCTATGACACCAGCTCCCACA 49421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705473728649280