Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq603829 161 1e-34 seq2112 111 2e-19 seq582081 87.8 2e-12 seq437285 87.8 2e-12 seq27981 82.4 8e-11 >seq603829 Length=323 Score = 161 bits (178), Expect = 1e-34 Identities = 148/185 (80%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 8369 TGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCT 8428 |||||||| ||||| | |||||||| ||||||||| || ||||||||| ||||| | Sbjct 323 TGCAGTGGTGCGATCTTGGGTCACTGCAGCCTCCGCCTGCCAGGTTCAAGCAATTCTTCC 264 Query 8429 GCCTCAGCCTCCAGAGTAGCTGGGATTACAG--GCAAAAGCCACCACGCCAAGCTAATTT 8486 || |||||||| ||||||||||| |||||| || |||| |||| || || Sbjct 263 ACCCCAGCCTCCCGAGTAGCTGGGGTTACAGGTGCCTGCCCCACGGCGCCTGACTCCATT 204 Query 8487 TTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 8545 | ||||||| |||||||| | ||||||||||| ||||||| ||||||||||||||||||| Sbjct 203 TCGTATTTTCAGTAGAGACGGGGGTTTCACCACGTTGGCCGGGCTGGTCTCGAACTCCTG 144 Query 8546 ACCTC 8550 ||||| Sbjct 143 ACCTC 139 >seq2112 Length=273871 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 175590 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 175531 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || |||||||| ||||||| Sbjct 175530 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 175471 Query 23651 CCAC 23654 |||| Sbjct 175470 CCAC 175467 >seq582081 Length=310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8466 GCCACCACGCCAAGCTAAT--TTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 249 GCCACCACGCCCAGCTAATGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGG 308 Query 8524 CC 8525 || Sbjct 309 CC 310 >seq437285 Length=264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 8561 CCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 263 CCTGCCTGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCC 208 >seq27981 Length=93525 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || |||||||| || | |||||||||||||||||| || ||||| || || Sbjct 23104 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23163 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| || || ||||| ||||| | ||||| Sbjct 23164 AATTTGGAAGCCATAGAAACAACGGGCTTC 23193 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || |||||||| || | |||||||||||||||||| || ||||| || || Sbjct 24247 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 24306 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| || || ||||| ||||| | ||||| Sbjct 24307 AATTTGGAAGCCATAGAAACAACGGGCTTC 24336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516030764970600