Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq26273 170 3e-37 seq1721 96.9 5e-15 >seq26273 Length=48589 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||| ||| || ||||| ||||| Sbjct 20469 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTTTTTAAGCACATCACACACT 20410 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||||||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 20409 CGGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 20350 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | || || ||| || | | || || |||||||| | Sbjct 20349 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCG 20290 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 20289 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 20241 Score = 140 bits (154), Expect = 5e-28 Identities = 217/310 (70%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| |||| | ||| | || || ||||| || || ||||| | |||| ||||||| Sbjct 22152 CATCTTGAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACT 22093 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 |||| | || | |||| ||| || || || ||||| || || ||||| ||||||| Sbjct 22092 GAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCC 22033 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | || || || || || |||| || ||||| |||||||| || || || Sbjct 22032 AGTACTCAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAG 21973 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 || | ||| |||| || |||||||||| ||||| ||||| || |||| | | | Sbjct 21972 CTTCTACCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCAG 21913 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 |||||||||| || || | |||||| || || || | || ||||| || |||| Sbjct 21912 GATACAGCTCCATGGCATCTATGTCTCCATAGAGTGCTTCTAACTCTGCAGCCATTTCCT 21853 Query 8577 TTTCTCCTGT 8586 | |||||||| Sbjct 21852 TCTCTCCTGT 21843 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 19328 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 19269 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 19268 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 19209 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | || | ||||| ||||| |||||| Sbjct 19208 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 19170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | ||| || ||||| || | Sbjct 21063 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGATGCCATGTTCC 21004 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | | || || ||||| |||| || | |||| |||| |||||||| | Sbjct 21003 AGTAAGATAGAGTTGTTATAGATAAACTGCTGATAGTTGTACTCCTGGCCATCAATCTGA 20944 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || |||| || | ||||||||| || | | |||||||||| | | ||||| Sbjct 20943 AAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCGATACGG 20884 Query 9124 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 ||||||||||||||| | | ||| ||||| || || | |||| ||| | || || Sbjct 20883 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 20825 Query 9183 GTAGCCGCTGAGCTGCTGAACGTA 9206 ||||| || | ||||| ||||| Sbjct 20824 ATAGCCACTCAAGTGCTGTACGTA 20801 >seq1721 Length=164191 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || | |||||||| || |||||||| | ||| || || Sbjct 61634 TCACCAATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTGGGGTGC 61693 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| |||| |||||||| || || || | | Sbjct 61694 TCCGCCTTCAGCAGGTCACACACGCGGTTGTGCTCCCGCAGCCAGATCGTAGCATAGAGC 61753 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 61754 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 61796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709374872468160