Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10000 163 7e-35 seq9815 136 9e-27 seq7597 136 9e-27 seq308 122 2e-22 seq115256 96.9 8e-15 >seq10000 Length=929206 Score = 163 bits (180), Expect = 7e-35 Identities = 171/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||| | |||| Sbjct 685516 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGG 685572 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 685573 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 685630 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| || || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 685631 TCCCCCTGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 685690 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 685691 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 685732 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 685755 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 685812 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 685813 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 685872 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 685873 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 685932 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 685933 TCCAGAAAGAGTCGACCCTGCACCTGGT 685960 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 685983 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 686040 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 686041 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 686100 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 686101 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 686160 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 686161 TCCAGAAAGAGTCGACCCTGCACCTGGT 686188 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 686211 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 686268 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 686269 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 686328 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 686329 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 686388 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 686389 TCCAGAAAGAGTCGACCCTGCACCTGGT 686416 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 686439 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 686496 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 686497 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 686556 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 686557 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 686616 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 686617 TCCAGAAAGAGTCGACCCTGCACCTGGT 686644 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 686667 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 686724 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 686725 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 686784 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 686785 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 686844 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 686845 TCCAGAAAGAGTCGACCCTGCACCTGGT 686872 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 686895 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 686952 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 686953 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 687012 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 687013 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 687072 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 687073 TCCAGAAAGAGTCGACCCTGCACCTGGT 687100 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 687123 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 687180 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 687181 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 687240 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 687241 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 687300 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 687301 TCCAGAAAGAGTCGACCCTGCACCTGGT 687328 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 687351 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 687408 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 687409 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 687468 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 687469 AGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 687528 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 687529 TCCAGAAAGAGTCGACCCTGCACCTGGT 687556 >seq9815 Length=175929 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| || || || Sbjct 59601 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCGTCGGAT 59660 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 59661 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAGCAA 59720 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| | ||| | | || || ||| | Sbjct 59721 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAACATT 59780 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || || ||||| Sbjct 59781 CAAAAGGAGTCCACTCTTCATCTAGTGTTAAGACT 59815 >seq7597 Length=568930 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || ||||| ||||| || |||||||| || || Sbjct 229639 CAGATCTTTGTAAAAACCCTAACTGGTAAAACCATCACTCTGGAGGTGGA--GCCTAGTG 229696 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || |||||||| |||||||| ||||||| Sbjct 229697 ACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGACCAGC 229756 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 229757 AGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 229816 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 229817 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 229857 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 229867 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 229924 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 229925 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 229984 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || |||| || ||| Sbjct 229985 AGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 230044 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 230045 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 230085 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 230095 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 230152 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 230153 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 230212 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 230213 AGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 230272 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 230273 TCCAGAAAGAGTCTACTCTGCA-CTTG 230298 >seq308 Length=189498 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || | || || || |||| ||| ||||||| ||| || Sbjct 116111 CAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTGGAGCCCTCGGAT 116052 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 116051 ACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 115992 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | || || ||| | Sbjct 115991 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAACATT 115936 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || ||||| || |||||||| Sbjct 115935 CAAAAGGAGCCCACTCTTCATCTAGTGTTGAGACT 115901 >seq115256 Length=201 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/135 (77%), Gaps = 7/135 (5%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||| | |||| Sbjct 70 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGG 126 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 127 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 184 Query 178028 CCCTCCGGACCAGCA 178042 || || |||||||| Sbjct 185 TCCCCCTGACCAGCA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190819550695726