Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq82 165 8e-36 seq66 102 8e-17 >seq82 Length=8814989 Score = 165 bits (182), Expect = 8e-36 Identities = 272/386 (70%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||||||| || || || || || ||||| |||||||||||||| |||||| Sbjct 1281315 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 1281374 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||||||| | |||| ||| |||||||||||| | ||| |||| | || Sbjct 1281375 TCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCA 1281434 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || ||||||||||| || || || | | ||||| || | | ||||| ||||| Sbjct 1281435 AAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTAC 1281494 Query 17126 GTCGCGTCTTTGT-TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184 || || ||||||| | || |||| | |||| || || | ||||| || Sbjct 1281495 GTAGCCTCTTTGTCTTCG-ATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGG 1281553 Query 17185 CATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 || || || |||| || || | | ||| |||| | || | || | || || || Sbjct 1281554 CACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCT-TTGGA-ATCTTTAATGTAAGTG 1281611 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| || |||| |||||| || |||||||| |||| ||| || || || || || Sbjct 1281612 TCAATGAGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAG 1281671 Query 17303 AAGCATCGGGCTTCCGCTATTTGAAC 17328 || | |||||||||| || ||||| Sbjct 1281672 AAATAACGGGCTTCCGTAATCTGAAC 1281697 >seq66 Length=17242564 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| |||||||| || |||||||| | || |||||| ||||||||| | Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 17106 C 17106 | Sbjct 10224038 C 10224038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534809174240