Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq82 154 2e-32 seq71 114 1e-20 seq66 98.7 1e-15 >seq82 Length=8814989 Score = 154 bits (170), Expect = 2e-32 Identities = 395/602 (66%), Gaps = 27/602 (4%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| ||||| || || || ||||| || |||| || ||||||||||| |||||| Sbjct 1281315 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 1281374 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || | ||| |||||||||||| | ||| |||| | ||| Sbjct 1281375 TCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCA 1281434 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || | | ||||| || | | ||||| ||||| Sbjct 1281435 AAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTAC 1281494 Query 16364 GTAGCATCTTTAT-TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 ||||| ||||| | | || |||| | |||| || || | |||| | || Sbjct 1281495 GTAGCCTCTTTGTCTTCG-ATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGG 1281553 Query 16423 CATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTA 16480 || || || |||| || || | | ||| |||| | || ||| | || || || Sbjct 1281554 CACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGA--ATCTTTAATGTAAGTG 1281611 Query 16481 TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG 16540 ||||| || | ||||| |||||| || |||||||| || | ||| || || || |||||| Sbjct 1281612 TCAATGAGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAG 1281671 Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTC 16600 || | || || |||| || || | ||| ||| ||||| Sbjct 1281672 AAATAACGGGCTTCCGTAATCTGAA---------------------CCAAGTTTTCATTT 1281710 Query 16601 ACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA 16660 || || | |||||||| ||| | || |||| | | | ||||| || | || ||| Sbjct 1281711 ACTATGCTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCA 1281770 Query 16661 GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAA 16720 | | || | ||| | | || ||||| | |||| || || | ||||| Sbjct 1281771 GGCTTCAGGGCTTCCCAGGGCTGAATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCAG 1281830 Query 16721 AAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACG 16780 ||| |||| | || || |||||||| | ||||| |||| ||||| || ||||| | | Sbjct 1281831 AAGGAAGCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGATG 1281890 Query 16781 AC 16782 || Sbjct 1281891 AC 1281892 >seq71 Length=10149521 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 1782288 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1782229 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 1782228 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1782169 Query 16344 C 16344 | Sbjct 1782168 C 1782168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 1798421 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 1798362 Query 15985 GGGATT 15990 |||||| Sbjct 1798361 GGGATT 1798356 >seq66 Length=17242564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| ||||||||| || Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGC 10224038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403737009760