Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq83 131 1e-25 >seq83 Length=9572586 Score = 131 bits (144), Expect = 1e-25 Identities = 374/562 (67%), Gaps = 15/562 (3%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | |||| |||| |||| |||||||| | ||| | || |||| ||||| Sbjct 1005930 GGGGATTTAGGCCTAGTTTATAGCTTTCAGTGGAGGCTTTTGGTGGCCAAATACAAAGA- 1005872 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| || || | | | ||| |||||| | || || ||||||| || || || |||| Sbjct 1005871 TGTGGATTTAAATTTATTCAGGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAA 1005812 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGT-CTTGGAATCCAAAGGATATC 18965 | ||||| ||||| ||| | || |||| ||| || ||| ||||||||| ||| || Sbjct 1005811 TCAAAACCAACCCTGAAGACAGAAGAATCATTCTA-CGTGCTTGGAATCGTAAGATCTTC 1005753 Query 18966 CCCTTA-ATGGTACTACCT---CCATGTCACACGT--TATGTCAGTTTTACGTTGCAAAC 19019 | || | | || ||| || ||| || | | || || || ||||| ||| Sbjct 1005752 CTCTCATACCCCACCACCCTGCCCCTGTGCCATGCCCTTTGCCACTTCTACGTGATGAAC 1005693 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||| | |||||| | | |||||||| || || || |||||| | || | ||| Sbjct 1005692 CATGACTG-TCCTGC-AGCTGTACCAGAGGTCAGGAGACGGGGGCCTGAGTGTGTCCTTC 1005635 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC 19139 ||||| || | ||||| || || |||||||| | || || | ||||| || || | Sbjct 1005634 AACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCA 1005575 Query 19140 GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT-TT 19198 || || | | || || |||| ||||||||||||||| || |||| || || ||| | Sbjct 1005574 GGTGACTCTGTACACACTTTGGGAGATGCACATATTTACCTGGATCACATTGA-GCTGCT 1005516 Query 19199 AAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGT 19258 ||| ||||||| || ||| ||||| || || ||||| || |||| || Sbjct 1005515 GAAAATGCAGCTTCAGGGAGAATCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGT 1005456 Query 19259 AACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccc 19318 | || | ||||| || || || |||||| |||| || || | ||| || || Sbjct 1005455 TGAGAAAATCGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCC 1005396 Query 19319 cccccTAAAAATGGAAATGGCT 19340 | | | ||||||||||||||| Sbjct 1005395 CACTATTAAAATGGAAATGGCT 1005374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399495878583060