Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq82 237 2e-57 seq114 134 2e-26 seq66 132 6e-26 seq133 122 1e-22 seq71 102 1e-16 seq4 96.9 4e-15 >seq82 Length=8814989 Score = 237 bits (262), Expect = 2e-57 Identities = 409/599 (68%), Gaps = 24/599 (4%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| || || || || ||||||| |||||||||||| ||||| | ||| Sbjct 1281318 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 1281377 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| |||| ||| || || || || || ||||| |||| || ||||| Sbjct 1281378 TTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAA 1281437 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || ||||||||||| |||||||| |||| |||||||| | | | |||||| || | Sbjct 1281438 GAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTA 1281497 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| | |||| |||||||| ||| ||| |||||| |||||| | Sbjct 1281498 GCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACT 1281557 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| | ||||| ||||| | | |||| || |||||||| || || ||||| Sbjct 1281558 GTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 1281617 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | ||||| | |||||| ||||| |||||||| | ||| ||||| || || |||||| | Sbjct 1281618 AGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAA 1281677 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | || || |||||||| | | || |||||||| ||||| Sbjct 1281678 CGGGCTTCCGTAATCTGAA---------------------CCAAGTTTTCATTTACTATG 1281716 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 | ||||| |||||| | || |||| ||| | ||| || | || || || | Sbjct 1281717 CTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCAGGCTTC 1281776 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 || | ||| | || || || || | |||| || || ||||||| || || Sbjct 1281777 AGGGCTTCCCAGGGCTGAATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAA 1281836 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| || || |||||||| | ||| | ||| | |||| || ||||| || ||||| Sbjct 1281837 GCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGATGACAAA 1281895 >seq114 Length=7505490 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 195372 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 195431 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 195432 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 195491 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 195492 CTGTTTCTTATACCATA 195508 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 217254 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 217313 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 217314 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 217373 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 217374 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 217419 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || | |||||| || || || || || || | Sbjct 200086 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 200145 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 200146 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 200205 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | |||||||| |||||||| | ||||| || ||||| || || || | ||| Sbjct 200206 ACCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 200263 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 204649 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 204708 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 204709 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 204768 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 204769 AGGCTCCAGGTAAAT 204783 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||| | ||| || || |||||||| ||||||||||| ||||||| |||||| |||||| Sbjct 200488 TCTGGGACAGGGTAGTAGTTAATATCAATAATTTTATTCAGGTTTCGGACAATGACTTTG 200547 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || ||| | ||| ||| || ||| | | | ||| |||| |||| Sbjct 200548 GTGACTTCAGCCAATTTCATAAAGTCATATGTGTGTTCCGATGTAACATACATATTCAGG 200607 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || |||| |||||||| || |||| Sbjct 200608 GCCAGGGAAGCCAAGTTACAAACTGCAACCT 200638 >seq66 Length=17242564 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || |||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 10224038 CTACAACACGTTCTCC 10224053 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 10225902 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10225961 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 10225962 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 10226007 >seq133 Length=6119822 Score = 122 bits (134), Expect = 1e-22 Identities = 247/359 (69%), Gaps = 11/359 (3%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || |||||||| ||| ||| ||| || || || ||||| | ||| ||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAA-TCC-CTTTCAGTGTCATCTAAAACTTGAACTTCC 1720725 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| ||| ||||||||| | | || ||||| || |||| ||| ||| | || Sbjct 1720724 TCTATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTG 1720665 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | || | | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 1720664 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1720605 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 1720604 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1720545 Query 22118 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 22177 |||| ||| |||||||| ||||| | | || ||| ||||| || | || | Sbjct 1720544 GCTACTCTCCCATAGCACCCATTAGGAAGAGCGATCTGAATGTCTGTTTTCA-CAAGAG- 1720487 Query 22178 CTTTCTCC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCGGCG 22234 |||||||| || || | || || ||| | || || |||| ||||| || |||||| Sbjct 1720486 CTTTCTCCATAGGTGGTACTGTGTATTCACAGGCACTGTATAGGTCATAGCCCGCGGCG 1720428 >seq71 Length=10149521 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 1782286 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1782227 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1782226 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1782168 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || || | || |||||| Sbjct 1777928 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 1777869 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 || || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 1777868 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 1777813 >seq4 Length=32345528 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 14664409 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 14664466 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || Sbjct 14664467 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 14664526 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | || | | ||| ||| ||||| || | || | | |||||| ||||||||| Sbjct 14664527 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAACAACATTTCCTCTATAATCT 14664586 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||||| ||||| |||| | ||| || | |||| | || ||||| | ||| Sbjct 14664587 TCATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 14664646 Query 22118 GCTATTCTACCATAGCA 22134 |||| ||| |||||||| Sbjct 14664647 GCTACTCTCCCATAGCA 14664663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709220904640