Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq202 289 3e-73 seq7 170 2e-37 seq63 132 6e-26 seq26 122 1e-22 seq9 120 4e-22 seq16 86.0 8e-12 >seq202 Length=4085823 Score = 289 bits (320), Expect = 3e-73 Identities = 267/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || |||||||| ||||| | | | | |||| | ||||| ||||||||||||| Sbjct 3698104 AGCAGAGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 3698163 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 3698164 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGTCGTTGCGG 3698223 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 3698224 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTG 3698283 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || ||||||| |||||||||||||||| | | || || ||| Sbjct 3698284 GGCGTGGGCAGAGCCTCCCGAAGGAAGGTGAAGAGCGGATGTGCCTTCTCGCCATTCACC 3698343 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| ||| || || || || | ||| Sbjct 3698344 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACATACTTG 3698403 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| ||| |||||||| Sbjct 3698404 AGGCAATTCAGGATCTCCTCGTTCTTGGCATTTTCCTG 3698441 Score = 178 bits (196), Expect = 2e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 3698714 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 3698773 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| |||||||| || | |||||||| ||||| | Sbjct 3698774 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 3698833 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | | || ||| |||| || || || |||| Sbjct 3698834 CATTCTCAATGAGCAGCACCTTGCCCCGAAGGGACCCCAAGTTCACGGGCTCCCCGCCGG 3698893 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | ||| || || |||||||||||||| || Sbjct 3698894 CCAGCGGACGCGCAGAGAAGGCGTACACCGA 3698924 >seq7 Length=31971148 Score = 170 bits (188), Expect = 2e-37 Identities = 269/384 (70%), Gaps = 20/384 (5%) Strand=Plus/Minus Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 ||||||||| || |||| ||||| ||||||||| |||| | ||| || ||| Sbjct 25530443 CCAGGCCACTTCTTTGCCACACACCAGAGACCAGGTGATGAACCTGGG-----TCCTGAG 25530389 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 | | | || | || |||| ||||| ||||| || |||||| | |||||||| | Sbjct 25530388 GGCAGTGGCGGCGACACTGGGCGTGGGCAGAGCCTCGCGAAGGAAGACAAAGAGCGG--G 25530331 Query 83278 TGCCCTTGCA--CCGTTGACCTCGC--------ACTTCTCGAAGAGCATAAAGTTCGGCT 83327 | | | ||| || || ||||||| |||||||||||||||| ||||| |||| Sbjct 25530330 TACACCTGCGAGCCATTCACCTCGCGCTTCTCCACTTCTCGAAGAGCATGAAGTTGGGCT 25530271 Query 83328 CGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGT 83387 |||| | ||| || || | ||||| ||| ||| || || ||||||| || | |||| Sbjct 25530270 CGAACCTGTTGCCTGGTCTGACGTACTTGAGGCAATTCAGGATCTCG---TTTGGCGCGT 25530214 Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 ||||||| || || ||| |||| |||| ||| | ||||| ||||| || || | || | Sbjct 25530213 TTTCCTGATGCCCAAACCGGTTGCACGCGAAGCTGAGCACGACCAGGCCTCGGGGCCCGA 25530154 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 |||||||| |||| | |||| ||| |||| ||| |||||| | |||| || || | Sbjct 25530153 GGCGCCGCCTCAGCACTTTCACCTGTGTGTCATCCTGGACCGCTGTGCCTCCGAACGATG 25530094 Query 83508 CTACGTTCTCGATGAGCAAGACCC 83531 | | || ||| ||||| | ||| Sbjct 25530093 CCAAGTCCTCAGCGAGCAGGGCCC 25530070 >seq63 Length=12735091 Score = 132 bits (146), Expect = 6e-26 Identities = 183/253 (72%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| |||||||| || ||| | | ||| | | | |||||| | ||||| ||||||| Sbjct 7571018 GGGGCAGCAGGGCTTCAATGGCAGCCTCGAGGTCGAGGGTCAGAAAGCGGCAGCTGTACG 7571077 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGT 83171 | |||||| | | ||| | ||||||| || ||||| |||||||||||| |||||| Sbjct 7571078 CGTGCACGG-CACACAGTCCGGGCCCACCAGGAGCTTCTGGAAGTTCCAGGCGACGTCGC 7571136 Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231 |||||||||| ||||||||||| | ||||| | ||||| ||||||| | ||| | Sbjct 7571137 TGCGGCACACCGGAGACCAGGCGAGGAGCTTGTGGTCGGTCACGAGGGCAGGGGCGTCCT 7571196 Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGT 83291 | | | ||| ||| || |||| | ||||||||||| | || ||| || |||| Sbjct 7571197 CACCATGCG--TGCATAGCGCCTCG--CGGAGGCGAAGAGCCGGTGCGCCTGCGCGCCGT 7571252 Query 83292 TGACCTCGCACTT 83304 | |||||| ||| Sbjct 7571253 TCCCCTCGCCCTT 7571265 Score = 109 bits (120), Expect = 7e-19 Identities = 155/215 (72%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT-AGG 83449 |||| || || ||||| || | |||||| || ||| | ||||| ||| || || ||| Sbjct 7571616 CCTGTTGCCCAAACTGCTTGCTCGGGAAACCGAGCGCGACCAGGCCCGACGCCCCCGAGG 7571675 Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 |||||||||||||| ||||||| |||| ||| ||||||| | |||| ||| ||| Sbjct 7571676 TGCCGCCGCTGCAGCTCATTCATCTAGGTGTGGTCCGGGACCGTCTTGCCTCTGAGCGAC 7571735 Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCT 83566 || |||||||| |||||| || | |||| | | ||| | |||||| | ||| | Sbjct 7571736 GCCACGTTCTCAGTGAGCAGCCCCTTGGCCCGCAGGGGGCCCAGGCTCACGGCTTCCTCA 7571795 Query 83567 CCGGTAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 |||| | |||||| || || |||| | |||| || Sbjct 7571796 CCGGCCAGCGGGCGCGCAGAAAAGG-GGACACGGA 7571829 >seq26 Length=15957711 Score = 122 bits (134), Expect = 1e-22 Identities = 162/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| | | || |||||||| | ||| ||| | ||| ||||||||||||| |||| Sbjct 10315262 CAGGGCTCCAACGTTGGGCTCCATGTCCATGGTTAGAAAGCAGTGGCTGTACCTGTGCAC 10315321 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| || | ||||||| ||||||||| ||||||||||||||||| ||| ||| Sbjct 10315322 AGGCACATTGTTGGGGCCCACCAGGAACTTCTCCAAGTTCCAGGCCACGTCACTGCAGCA 10315381 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||||| |||||||| | | || |||| | ||| ||| | | || ||| | | Sbjct 10315382 CACTGAAGACCAGGTGAAGTACTTGGGGCCAGTCATGAGTGCAGGGACGTTGTCATTGGA 10315441 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||||||||| ||||| | | |||||| ||| || ||||||| Sbjct 10315442 CGCCGGCAGAGCCTCAGGAAAGAAGGC-AAGCGCCAGTGTGCCC 10315484 >seq9 Length=27858397 Score = 120 bits (132), Expect = 4e-22 Identities = 206/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACGGCGCAAGCAG---GTCTATCTACAACTTCGCTGTGCGTAT 50466 ||| ||||||| || |||| |||||| ||| || |||||| || || | Sbjct 10310713 GCAGCTGCGCAGCATCTACGA---AAGCAGCCTGTCCATTGGCAACTTTGCCTCACGCCT 10310769 Query 50467 GCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTG 50526 ||||||| || |||| || |||||||| || |||||||||| || ||| | |||||| Sbjct 10310770 GCTCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTG 10310829 Query 50527 CTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACT 50585 | |||||| |||||||| |||| || |||||| ||| | | |||| |||| Sbjct 10310830 CAGCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACT 10310888 Query 50586 ATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTG 50644 | |||||| |||| ||||| ||| || || ||||| |||| ||| ||||| || Sbjct 10310889 ACGTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTG 10310947 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||||||||||||||||||||| | |||||| || |||||| Sbjct 10310948 GGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 10310995 >seq16 Length=17494547 Score = 86.0 bits (94), Expect = 8e-12 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 83352 GCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCG-AACTGGTTA 83410 |||| |||||| || | |||| | || || ||| ||||| || | | |||||||| Sbjct 4968424 GCTTGAGGGAATTCAGGCTCTCTTGGTACTTGGTGTTCTCCTGATGCCTGGAACTGGTTG 4968483 Query 83411 CACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATC 83470 || ||||| || ||||||||||| || | || || ||| |||||||| ||||||| Sbjct 4968484 CATGGGAAGCCCAGCACTACCAGGCCTGGGGCAA--AGTTGCCACTGCAGCTGGTTCATC 4968541 Query 83471 TGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAG 83523 |||||| | || | |||| | | || ||||| | || | ||||| ||||| Sbjct 4968542 TGAGTGCAGTCTCAGACCTTTGTGCCGCAGAGAAATGCCGCTTTCTCAATGAG 4968594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608784106586720