Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq20 125 6e-24 seq84 116 3e-21 seq34 93.3 4e-14 seq62 87.8 2e-12 seq259 82.4 6e-11 seq53 82.4 6e-11 >seq20 Length=22150888 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 5019742 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 5019683 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 5019682 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCC 5019623 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 5019622 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5019563 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || || || || || |||||||||| Sbjct 5019562 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 5019526 >seq84 Length=11797838 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | | || Sbjct 5420807 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 5420748 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 5420747 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 5420688 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 5420687 TGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 5420628 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || || || || ||||| Sbjct 5420627 TTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 5420596 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| | | || Sbjct 5419749 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 5419690 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || || ||||||||||| ||| | ||| || || || Sbjct 5419689 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCT 5419630 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 5419629 TGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5419570 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || || || || || || || |||||| Sbjct 5419569 TTACCAGTCAAGGTCTTCACGAAGATCTGCATT 5419537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 5420591 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 5420534 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || ||||||||||| || ||| | || || ||||||||||| ||| | Sbjct 5420533 GAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGA 5420474 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 5420473 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 5420414 Query 21130 CCACGGTAATGGT 21142 ||| ||| ||||| Sbjct 5420413 CCAGGGTGATGGT 5420401 >seq34 Length=14701056 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || | ||||| || || | || || ||| |||| Sbjct 8730394 GAGGACCAGGTGCAGTGTCGACTCTTTCTAGATGTTGTAATCAGAAAGAGTGTGGCCGTC 8730335 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||| ||| | || || ||||||||||| ||| | ||||| ||| || Sbjct 8730334 TTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTT-CTTATC 8730276 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| |||| | ||| || |||| || |||| |||| ||| | || Sbjct 8730275 CTGGATCTTGGCCTTCATGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACAGT 8730216 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 8730215 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8730183 >seq62 Length=15298998 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | ||| | ||| | |||||||||||| |||||||| ||||| | | Sbjct 5534027 CCACCACGAAGCCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 5533968 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| | || ||||| |||||||| || Sbjct 5533967 AACGTACGTCCATCTTCCAGGTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 5533908 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||||| |||||| Sbjct 5533907 ATTCCTTCCTTGTCCTGGATCTT 5533885 >seq259 Length=1197011 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| ||||| | ||||||| ||||||||||||| | ||| | Sbjct 605931 CCACCACGAAGTCTCAACACAATATGAAGAGTGGACCCCTTTTGAATGTTGTGGTCAAAC 605872 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| | || |||||||||||||| || Sbjct 605871 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGGGAA 605812 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||||| |||||| Sbjct 605811 ATTCCTTCCTTGTCCTGGATCTT 605789 >seq53 Length=16102195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||||||||||||||||||||| | ||| | | Sbjct 15465276 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTGGTCAGAC 15465335 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||||||| ||||| ||| | || ||||| |||||||| || Sbjct 15465336 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 15465395 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | |||||||||| |||||| Sbjct 15465396 ATTACTTCCTTGTCCTGGATCTT 15465418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250615998288