Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq82 156 4e-33 seq84 140 3e-28 seq20 136 4e-27 seq62 107 2e-18 seq34 102 8e-17 seq33 102 8e-17 seq8 91.5 2e-13 seq4 86.0 6e-12 seq24 82.4 8e-11 >seq82 Length=8814989 Score = 156 bits (172), Expect = 4e-33 Identities = 513/790 (65%), Gaps = 38/790 (5%) Strand=Plus/Minus Query 116594 AACCCCC-GCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||||||| |||| || || || || || || |||||| || | |||| ||||| || Sbjct 1281908 AACCCCCTGCCGCTTTGTCATCTTTCCTATCGAATACCGTGATGTTTGGCAGATGTATAA 1281849 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG-AGCG 116711 || || ||||| || |||||||| | |||||| ||||||| |||||||||| ||| Sbjct 1281848 GAAAGCGGAGGCTTCCTTCTGGACAGCTGAGGAGCTGGACCTTTCCAAGGACATTCAGCC 1281789 Query 116712 ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||||| | |||| | ||| | ||||| | || ||||| || | | Sbjct 1281788 -CTGGGAAGCCCTGAAGCCTGAAGAGAGATGTTTCACTTCGTGTGTTCTGGCTTTCTCTG 1281730 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 | || || || |||| || || || || |||| || || || Sbjct 1281729 CAGCAAGTGATAGCATAGTAAATGAAAACTTGGTTCAGA-TTACG--------------- 1281686 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 || || || | ||||| ||||| || || ||| |||| ||| | || || |||| Sbjct 1281685 -----GAAGCCCGTTATTTCTATGGCTTCCAAATTGCCGTGGAAAACATACATTCTGAAA 1281631 Query 116892 TGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGC---TCCGTTTGT 116948 || | |||||| ||||| ||| | ||| | || | | ||| | | Sbjct 1281630 TGGACAGTCTCCTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTCC---TCT 1281574 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | || |||| ||||| |||| | || || || ||| || ||||| ||||| ||| Sbjct 1281573 TCAATGCCAGTGAGACAGTGCCTTCTGTAAAGAAGGCGGCAGATTGGGCCTTGCGCCGGA 1281514 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 ||| | || |||||| | | ||| || || | || ||||| || || | || || Sbjct 1281513 TCGAAGACAAAGAGGCTACGTACGGAGAACGTGTCGTAGCCTTTGCCGCAGCGGAAGGAA 1281454 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 |||||||||| || ||| || | |||| |||||||||||||| || |||||| ||| Sbjct 1281453 TCTTCTTTTCTGGTTCTTTTGCATCTGTATTGTGGCTCAAGAAACGAGGACTCATGTCCG 1281394 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 |||| || || ||| || || || ||| ||||||||| | || || |||||||||| Sbjct 1281393 GCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCT 1281334 Query 117189 GTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC-GCGCGTCAGGGA---GATC 117244 | || ||||||| || || | || | | || || || | | |||| || ||| Sbjct 1281333 GCCTGATGTTCAAACACCTGCTACA-CAAACGTTCGGAGCAGAGAGTCAAAGAAATAATC 1281275 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 |||| | || | | | || || |||||||| || || ||| | ||| || Sbjct 1281274 GTCAGTGCAGC--TAG-GACAGAACACGAGTTCCTCACGGAGGCCCTGACAGTGGAGCTC 1281218 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | || | ||||||| |||| ||| ||| |||| ||||| || ||||| || || Sbjct 1281217 ATCGGGATGAATTGCGCTTTGATGAAGCAGTACGTCGAATTCGTGGCAGACAGACTTATG 1281158 Query 117365 CTCGAGCTGG 117374 || ||||||| Sbjct 1281157 CTGGAGCTGG 1281148 >seq84 Length=11797838 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 5420596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 5420655 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 5420656 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 5420715 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || ||||||||||| || | ||||||||| ||||||||| Sbjct 5420716 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5420775 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| ||||| || || ||||||| ||||| || Sbjct 5420776 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTAAGGGGAGG 5420822 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 5419537 AATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 5419596 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | || ||||||||||||||| | |||| Sbjct 5419597 TGACACCATCGAGAACG-TCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACC 5419655 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || || ||||||||||| || | ||||||||| ||||||| Sbjct 5419656 AGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 5419715 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 5419716 ACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 5419764 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCT 40781 ||||||||| | || || || ||| |||| | | | |||| | |||| || || | Sbjct 5420401 ACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACG-TGAAGGCCAAGATCCA 5420459 Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 || || || ||||||||| | |||||||| | || |||| || || ||||||||||| Sbjct 5420460 GGATAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGA 5420519 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || | ||||| || || |||||||||||||| ||| | || ||||| || || | Sbjct 5420520 AGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCT 5420579 Query 40902 GCGCTTGAGGGGCGG 40916 || ||||||| || Sbjct 5420580 CCGTCTGAGGGGTGG 5420594 >seq20 Length=22150888 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 5019528 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 5019587 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||||||| | || Sbjct 5019588 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGA 5019646 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || |||||||||||||| || | ||||| ||| || || Sbjct 5019647 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTA 5019706 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 5019707 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGC 5019758 >seq62 Length=15298998 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| | ||| | || || || ||||| || |||||||| |||| |||||| || | | Sbjct 5533802 TGCAGACTTTCTTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGG 5533861 Query 40751 ACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 | || | ||||| | |||| || || | ||||| || || || || | |||||| Sbjct 5533862 ATGCAGTAGAAAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 5533920 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| |||| || ||||| || ||||| || | || || | ||||||||| Sbjct 5533921 CAAAGACTGATCTTTGCAGGCAAGCACCTGGAAGATGGACGTACGTTGTCTGACTACAAC 5533980 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || ||||||||| |||| || ||||| |||||| Sbjct 5533981 ATTCAGAAGGAGTCCACTCTTCATCTTGTGTTG 5534013 >seq34 Length=14701056 Score = 102 bits (112), Expect = 8e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | || || || ||| Sbjct 8730183 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTGTCACCCTGGAGGTGGAGTCCAGT 8730242 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || ||||||||| | |||||| Sbjct 8730243 GACACCATCGAGAACATGAAGGCCAAGATCCAGGATAA-GAAGGCATCCCCCCTGACCAG 8730301 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || |||||||||||||| |||| | ||| || || |||||| Sbjct 8730302 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCACACTCTTTCTGATTACAAC 8730361 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||| ||| | || ||||| || || | | ||||||| ||| Sbjct 8730362 ATCTAGAAAGAGTCGACACTGCACCTGGTCCTCCATCTGAGGGGTGGC 8730409 >seq33 Length=16598743 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| |||||||| || || || ||||| || |||||||| |||| ||| || || Sbjct 8626953 AATATGCAGATATTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAACCC 8627012 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | ||||| || || || || | ||| Sbjct 8627013 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 8627072 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| |||| |||| || ||||| || | ||| | | || || || |||||| Sbjct 8627073 CACCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAAATGGACGTACTCTGTCTGACTAC 8627132 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||| |||||| Sbjct 8627133 AACATTCAAAAGGAGCCCACTCTTCATCTTGTGTTG 8627168 >seq8 Length=29698465 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||| ||||||||| | || || || ||| | Sbjct 12480362 ATGCAGATCTTCGTGAAGACCCTGACCTGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 12480303 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || || || || | || || || || | || ||||| ||||||| || ||| || Sbjct 12480302 GA--GCCTGAGAATGTGCA-GGCCAAGATCCAGGATAAAGAAGGCATCCT-GCTGACAAG 12480247 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||| ||| || ||||||||| |||| || | ||||| || || |||||| Sbjct 12480246 CAGAGGCTCCTCTTTGCAGGCAAACAGATGGAAGATGGCCGCACTCTTTCTGATTACAAC 12480187 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| | || ||||| Sbjct 12480186 ATCCAGAAAGAGTCGACCCTGCA 12480164 >seq4 Length=32345528 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||| ||||||||| | || ||||| | ||||||| || |||||||||||||| Sbjct 25269312 GATAAAGAAGGCATCCCCCCTGATCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAA 25269371 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| | || |||| ||||||||| ||| | || ||||| || || | Sbjct 25269372 GATGGCCGCACTCCTTCTGATTACAGCATCCAGAAAGAGTCGACCCTGCACCTGGTCCTC 25269431 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 25269432 CGTCTGAGGGGTGGC 25269446 >seq24 Length=21601121 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||| ||||||||| || ||||||| | ||||| | || |||||||||||||| Sbjct 9816074 GATAAAGAAGGCATCCCCCCG-ACCAGCAGAGGCTCATGTTTGCAGGCAAACAGCTGGAA 9816132 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| | || |||||||||||||| ||| | || ||||| || || | Sbjct 9816133 GATGGCCGCACTATTTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTC 9816192 Query 40903 CGCTTGAGGGGCGGC 40917 || | ||||| ||| Sbjct 9816193 CGTCTAAGGGGTGGC 9816207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208457679680