Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 2e-15 >seq35 Length=15412958 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| ||| || ||||| || || || ||||| || || ||||| || || ||| Sbjct 5682696 TGGTGGTACTTTATTTCTAAAGGAATTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 5682755 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || || || |||||||||||||| | ||| |||||||| | Sbjct 5682756 AAGAAAAACAACCAAGTCTCCTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 5682815 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| |||| || || |||| Sbjct 5682816 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACAGG 5682852 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||| || |||||||| ||||||||| || || || Sbjct 5683915 GCATTTTTCGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTTATACTACGGG 5683974 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | |||| | ||| || ||| ||||||| |||||| ||||||||||| || || || | Sbjct 5683975 TTAACCGCCTTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCA 5684032 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 5684033 TGCTGCAGCTGGT 5684045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923177551346720