Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq20 102 9e-17 seq84 100 3e-16 seq30 98.7 1e-15 seq281 95.1 1e-14 seq156 95.1 1e-14 seq8 89.7 6e-13 >seq20 Length=22150888 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10832780 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10832721 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 10832720 TACTAACGAGGAATGA 10832705 >seq84 Length=11797838 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5406233 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5406174 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 5406173 TACTAACGAGGAT 5406161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5408819 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5408760 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5408759 TACTAACGAGGA 5408748 >seq30 Length=16613269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 12392382 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 12392441 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 12392442 TACTAACGAGGA 12392453 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 10174608 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 10174667 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 10174668 TATACTAACGAGGA 10174681 >seq281 Length=1713358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1586562 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1586621 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1586622 TACTAACGAGGA 1586633 >seq156 Length=4513605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 327 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 386 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 387 TACTAACGAGGA 398 >seq8 Length=29698465 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 ||||||||||||||| ||||||| || |||||||||| |||||||||||||||||| || Sbjct 29208263 CAGGGAATCGAACCCCGGTCTCCGGCATGACAGGCGGGGATACTCACCACTATACTAACG 29208322 Query 60134 AGGA 60137 |||| Sbjct 29208323 AGGA 29208326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805677603040