Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq82 181 1e-40 seq71 107 2e-18 seq66 107 2e-18 >seq82 Length=8814989 Score = 181 bits (200), Expect = 1e-40 Identities = 417/620 (67%), Gaps = 11/620 (2%) Strand=Plus/Plus Query 15961 TCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGG 16020 |||||| |||||||| || || || ||||| | ||||||| |||||||| ||||| || Sbjct 1281060 TCTCTTCTCAAAGAAGTTAGTCTTCCCTTC-AGTGAAATAGCCTCCATAAAGTCAAATGG 1281118 Query 16021 ATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCAC 16077 ||||| | || | | | | || | |||| |||| || | ||| || ||||| Sbjct 1281119 ATTTTCT--ACTCT-GAAAACCTTGCTAAAACCCAGCTCCAGCATAAGTCTGTCTGCCAC 1281175 Query 16078 AAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137 ||||| | ||||| ||||| ||| | || ||||| || || | | || | | || Sbjct 1281176 GAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCTCCACTGTCAGGGC 1281235 Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACT 16197 || || | || | | |||| | || | || | |||||| ||| | ||| | || Sbjct 1281236 CTCCGTGAGGAACTCGTGTTCTGTCCTAGCTGCACTGACGATTATTTCTTTGACT-CTCT 1281294 Query 16198 ATTT--AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAAT 16255 | |||| | | || | |||||| ||||| | || ||||| ||||| || || Sbjct 1281295 GCTCCGAACGTTTG-TGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAA 1281353 Query 16256 CCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTT 16315 || ||||| || || || | || || |||||||| || || | ||| ||||||||||| Sbjct 1281354 CCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTC 1281413 Query 16316 TTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAAT 16375 || | ||| |||| || ||||| |||||||||||||| || ||||| |||||||||| Sbjct 1281414 TTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAG 1281473 Query 16376 GCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaattt 16435 || || | || || |||||||| | ||| ||| |||| ||||||| | Sbjct 1281474 GCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCT 1281533 Query 16436 gctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTG 16495 || | || ||| | || |||| | ||||| || | | | |||||||| Sbjct 1281534 GCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTG 1281593 Query 16496 CTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATT 16555 |||| ||| ||||| || || || | ||| | |||||| ||||| || || |||| Sbjct 1281594 GAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCATTTCAGAATGTATGTTTTCCACG 1281653 Query 16556 GCTATCTGAAAACCATAAAA 16575 || || || || ||||| || Sbjct 1281654 GCAATTTGGAAGCCATAGAA 1281673 >seq71 Length=10149521 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 1798494 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1798435 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 1798434 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 1798375 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 1798374 CCATAAAATCAAAGGGATTTTCTG 1798351 >seq66 Length=17242564 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || |||||||| || || ||||| |||||||||||||| Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 10224039 Query 16379 AC 16380 || Sbjct 10224040 AC 10224041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502356624800