Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq82 159 3e-34 seq66 123 2e-23 >seq82 Length=8814989 Score = 159 bits (176), Expect = 3e-34 Identities = 414/629 (66%), Gaps = 29/629 (5%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || ||||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 1281315 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 1281374 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||||||| | || | ||| | ||||||||| || | ||| |||| | || Sbjct 1281375 TCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCA 1281434 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || || |||||||| ||||| || |||| ||||| |||| | |||||||| || Sbjct 1281435 AAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTAC 1281494 Query 14366 GATGCTTTTTTGT--TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 14423 | || | ||||| ||||| || ||||| || | || || | | || Sbjct 1281495 GTAGCCTCTTTGTCTTCGAT--CCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAG 1281552 Query 14424 CCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTAT 14483 || ||| ||| | ||||| || | |||| | ||||| | | | |||||| || | Sbjct 1281553 GCACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGT 1281612 Query 14484 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAA 14543 |||| || | || | ||||||||| ||||||||||||| || || || || ||||| | Sbjct 1281613 CAATGAGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGA 1281672 Query 14544 AACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAA 14603 || | | ||||| ||| ||||| |||| |||||||| | Sbjct 1281673 AATAACGGGCTTC-------CGTA-ATCTGA-------------ACCAAGTTTTCATTTA 1281711 Query 14604 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14663 |||| | |||||| |||||| | || |||| | | | || || ||||||| Sbjct 1281712 CTATGCTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCAG 1281771 Query 14664 TGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCA 14721 | || || ||| |||| || ||||| ||||| || | || ||| ||||||| Sbjct 1281772 GCTTCAGGGCTTCCCA--GGGCTGAATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCA 1281829 Query 14722 AAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 || ||| | ||||| |||||||| ||| | || ||| |||||||| | Sbjct 1281830 GAAGGAAGCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGAT 1281889 Query 14782 TACAAATCTTGAAGATGTTTCTTTAAGAA 14810 ||||| | | | |||||||| |||| Sbjct 1281890 GACAAAGCGGCAGGGGGTTTCTTTCAGAA 1281918 >seq66 Length=17242564 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 10224038 CTACAACACGTTCTCC 10224053 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 10222234 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 10222293 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| |||||||||||| Sbjct 10222294 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 10222329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335543094240