Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq114 111 1e-19 seq259 95.1 1e-14 seq62 82.4 7e-11 seq33 82.4 7e-11 >seq114 Length=7505490 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| ||||| || || || ||||| || || ||||| Sbjct 203314 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 203373 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 203374 CCTAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 203433 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 203434 CCTGTCTCTGTCTGAGACTCAATGATGGC 203462 >seq259 Length=1197011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||||| ||||| |||||||| || || ||||| |||| |||||||| || | Sbjct 605707 TGCAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCGAGGTTGAACCCTCGG 605765 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | |||| || || | || |||||||||||| | | || ||||||| Sbjct 605766 ATACAAAAGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 605825 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 || | || || || |||||||| || ||||||| | | | ||| || || | ||| Sbjct 605826 AGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTTTGACCACAAC 605884 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| | || ||||||||| | || | ||||| Sbjct 605885 ATTCAAAAGGGGTCCACTCTTCATATTGTGTTGAGACT 605922 >seq62 Length=15298998 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| | |||| | ||||| ||||| || || || ||||| |||| || ||||| || | Sbjct 5533802 TGCAGACTTTCTTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGG 5533861 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | || |||| || || | || |||||||||||| | || || ||||||| Sbjct 5533862 ATGCAGTAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGC 5533921 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || || ||||| || ||||||| | | | || || || || ||| Sbjct 5533922 AAAGACTGATCTTTGCAGGCAAGCACCTGGAAGA-TGGACGTACGTTGTCTGACTACAAC 5533980 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || ||||||||||| || Sbjct 5533981 ATTCAGAAGGAGTCCACTCTTCATCTTGT 5534009 >seq33 Length=16598743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || || ||||| |||| || |||| Sbjct 8626953 AATATGCAGATATTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAACCC 8627012 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || |||||||||||| | || || ||| Sbjct 8627013 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 8627072 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || | || || || |||||||| || |||| | | | | ||| || || || Sbjct 8627073 CACCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAAA-TGGACGTACTCTGTCTGACTA 8627131 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||||||| || | ||||| Sbjct 8627132 CAACATTCAAAAGGAGCCCACTCTTCATCTTGTGTTGAGACT 8627173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757105770560