Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq66 93.3 8e-14 seq82 89.7 1e-12 >seq66 Length=17242564 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||||||||||||| |||| | || ||||| || |||| Sbjct 10224043 TTGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 10223984 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || |||| || | || | ||||||| ||||| | |||||||| | ||| || | Sbjct 10223983 GGCTCAAAAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 10223924 Query 102036 ACGA 102039 |||| Sbjct 10223923 ACGA 10223920 >seq82 Length=8814989 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| |||| ||||||||||||||| |||| | || ||||| | || ||| Sbjct 1281478 GTAGCCTTTGCCGCAGCGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCTGTATTGTGG 1281419 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | || | || ||||| | |||||||| | ||| || ||| Sbjct 1281418 CTCAAGAAACGAGGACTCATGTCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 1281359 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAA 102076 || ||| | || | |||||||| ||| || |||| ||| Sbjct 1281358 GAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAA 1281320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562851352940