Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq82 215 5e-51 seq66 134 1e-26 seq71 120 3e-22 seq114 102 8e-17 >seq82 Length=8814989 Score = 215 bits (238), Expect = 5e-51 Identities = 448/655 (68%), Gaps = 14/655 (2%) Strand=Plus/Plus Query 11333 CCCATCTTTTGATA-TTCACTAA-CTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTG 11390 |||||| | ||||| || ||| ||| || || || || |||||||| ||||| |||| Sbjct 1281037 CCCATCCTCTGATACTTGCCTAGTCTCTTC--TCAAAGAAGTTAGTCTTCCCTTC-AGTG 1281093 Query 11391 ATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACT 11450 | ||| |||||||||| ||| ||||| | ||| |||| || || | |||| | || Sbjct 1281094 AAATAGCCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCT 1281153 Query 11451 CTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATAC 11510 | | | ||| ||||| |||||||| | ||||| ||| ||| |||||||| | Sbjct 1281154 CCAGCATAAGTCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCC 1281213 Query 11511 CTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAA 11570 | || || ||||| | | || | || | ||||| | |||| | || | ||| | Sbjct 1281214 CGATGAGCTCCACTGTCAGGGCCTCCGTGAGGAACTCGTGTTCTGTCCTAGCTGCACTGA 1281273 Query 11571 TGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAA 11629 |||||| | || || | || || || |||| | ||||| ||||| | Sbjct 1281274 CGATTATTT-CTTTGACTCTCTGCTCCGAACGTTTGTGTAGCAGGTGTTTGAACATCAGG 1281332 Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| ||||| |||||||| |||||||| || || |||||||| |||||||| | Sbjct 1281333 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 1281392 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 |||| ||| | ||||||||| || | ||| |||| || ||||| |||||||||||||| Sbjct 1281393 CCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAG 1281452 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGCTAGAT 11806 ||||| ||| | || ||||| ||||| || | |||||| || || ||| ||| Sbjct 1281453 ATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCG 1281512 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||| ||||||||| || ||| ||||| | || ||| || | || || Sbjct 1281513 ATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTG 1281572 Query 11867 AATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 || | ||| | ||||| | |||| | | || || || || | | ||| | || Sbjct 1281573 AAGAGGAATTC--CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCA 1281630 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||| ||||| || ||||||| || ||||| || ||||||||| | || || || Sbjct 1281631 TTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACGGGCTTC 1281685 >seq66 Length=17242564 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | || ||||||| |||||||||||| Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 10224039 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 10224040 ACAACACGTTCTCC 10224053 >seq71 Length=10149521 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 1782288 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1782229 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1782228 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1782169 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 1782168 CCACCACCCTTTCCCC 1782153 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 1778805 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 1778747 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 1778746 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 1778690 >seq114 Length=7505490 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || || || ||||| |||||||| Sbjct 195372 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 195431 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 195432 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 195491 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 195492 CTGTTTCTTATACCAT 195507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468515031257920