Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq82 228 1e-54 seq83 185 1e-41 seq114 134 2e-26 seq66 129 8e-25 seq133 113 6e-20 seq71 102 1e-16 seq4 91.5 2e-13 >seq82 Length=8814989 Score = 228 bits (252), Expect = 1e-54 Identities = 407/599 (68%), Gaps = 24/599 (4%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| ||||||| || || || || ||||||| |||||||||||| ||||| | ||| Sbjct 1281318 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 1281377 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 |||||||| ||||| |||| ||| || || || || || ||||| |||| || ||||| Sbjct 1281378 TTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAA 1281437 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319 || ||||||||||| |||||||| |||| |||||||| | | | ||||| || | Sbjct 1281438 GAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTA 1281497 Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 | | |||| | |||| |||||||| ||| ||| |||||| |||||| | Sbjct 1281498 GCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACT 1281557 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| | ||||| ||||| | | |||| || |||||||| || || ||||| Sbjct 1281558 GTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 1281617 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | ||||| | |||||| ||||| |||||||| | ||| ||||| || || |||||| | Sbjct 1281618 AGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAA 1281677 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | || || |||||||| | | || |||||||| ||||| Sbjct 1281678 CGGGCTTCCGTAATCTGAA---------------------CCAAGTTTTCATTTACTATG 1281716 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 | ||||| |||||| | || |||| ||| | ||| || | || | || | Sbjct 1281717 CTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCAGGCTTC 1281776 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || | ||| | || || || || | |||| || || ||||||| || || Sbjct 1281777 AGGGCTTCCCAGGGCTGAATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAA 1281836 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||||| || || |||||||| | ||| | ||| | |||| || ||||| || ||||| Sbjct 1281837 GCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGATGACAAA 1281895 >seq83 Length=9572586 Score = 185 bits (204), Expect = 1e-41 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||||||| |||||||||||||||||| Sbjct 7879661 TTTTTATTAACTGCTTCCAAAACCCGCAACAGGTGCAAGAATAGATTGATGATATCCAAG 7879720 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || | ||||| Sbjct 7879721 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAAGGAGTGT 7879780 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | |||||| || | ||||| || ||||| |||| Sbjct 7879781 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTACAGCAGCCAAGACCAACTCC 7879840 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 ||||| ||||| | | ||||| Sbjct 7879841 ACTGTCTCACTGTAAAAAAATA 7879862 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| |||||||||||| || |||||| ||||| Sbjct 7884692 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTACATACAGTCAAGCCAAGA 7884751 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | || |||||||||||||||||| Sbjct 7884752 AATACTGCAGTAGTCAGTATAAAAGCTTGCAGAACAATATACACATCATAGAAAGTAAC 7884810 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 7897873 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 7897932 Query 9907 TGGAGGAGCACGCGTAG 9923 |||||||||| | |||| Sbjct 7897933 TGGAGGAGCAGGGGTAG 7897949 >seq114 Length=7505490 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 195372 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 195431 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 195432 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 195491 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 195492 CTGTTTCTTATACCATA 195508 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| |||||||||||||| | || || ||||| || || || || | | Sbjct 217254 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 217313 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 217314 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 217373 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 217374 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 217419 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || | |||||| || || || || || || | Sbjct 200086 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 200145 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 200146 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 200205 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 | | | |||||||| |||||||| | ||||| || ||||| || || || | ||| Sbjct 200206 ACCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 200263 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 204649 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 204708 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 204709 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 204768 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 204769 AGGCTCCAGGTAAATAGC 204786 >seq66 Length=17242564 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || |||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 36300 C 36300 | Sbjct 10224038 C 10224038 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 10225902 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10225961 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 10225962 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 10226007 >seq133 Length=6119822 Score = 113 bits (124), Expect = 6e-20 Identities = 245/359 (68%), Gaps = 11/359 (3%) Strand=Plus/Minus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || |||||||| ||| ||| ||| || || || ||||| | ||| ||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAA-TCC-CTTTCAGTGTCATCTAAAACTTGAACTTCC 1720725 Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017 | | |||||| ||| ||||||||| | | || ||||| || |||| ||| ||| | || Sbjct 1720724 TCTATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTG 1720665 Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077 || | ||| | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 1720664 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1720605 Query 34078 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 34134 || ||||| ||||| |||||| ||| || |||| | || ||||| | ||| Sbjct 1720604 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1720545 Query 34135 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 34194 |||| ||| |||||||| ||||| | | || ||| ||||| || | || | Sbjct 1720544 GCTACTCTCCCATAGCACCCATTAGGAAGAGCGATCTGAATGTCTGTTTTCA-CAAGAG- 1720487 Query 34195 CTTTCTCC--TGGAGGGATAGTATAATAATAAGCGCTATATAAATCATATCCGGCGGCG 34251 |||||||| || || | || || | | | || || |||| ||||| || |||||| Sbjct 1720486 CTTTCTCCATAGGTGGTACTGTGTATTCACAGGCACTGTATAGGTCATAGCCCGCGGCG 1720428 >seq71 Length=10149521 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 1782286 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1782227 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1782226 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1782168 >seq4 Length=32345528 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 14664409 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 14664466 Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017 | | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || Sbjct 14664467 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 14664526 Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077 || | ||| | ||| ||| ||||| || | || | | |||||| ||||||||| Sbjct 14664527 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAACAACATTTCCTCTATAATCT 14664586 Query 34078 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 34134 || ||||| ||||| |||| | ||| || |||| | || ||||| | ||| Sbjct 14664587 TCATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 14664646 Query 34135 GCTATTCTACCATAGCA 34151 |||| ||| |||||||| Sbjct 14664647 GCTACTCTCCCATAGCA 14664663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159077097120