Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq58 145 7e-30 seq83 120 3e-22 seq28 114 1e-20 seq46 98.7 8e-16 seq4 98.7 8e-16 seq24 89.7 4e-13 seq63 82.4 7e-11 >seq58 Length=13669011 Score = 145 bits (160), Expect = 7e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 13148016 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 13147957 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 13147956 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 13147897 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | | || || || || || ||||| Sbjct 13147896 CCACGTAGAACTGGCAAAGGGCATGGCACGGGGGTAGGGCCAT 13147854 >seq83 Length=9572586 Score = 120 bits (132), Expect = 3e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 1005536 GTAAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 1005595 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| || || || ||||| |||||||||||||| || | || | |||||| Sbjct 1005596 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCC 1005655 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097 ||| | |||||||||||||||| ||||||||| Sbjct 1005656 GTCTCCTGACCTCTGGTACAGCT-GCAGGACAG 1005687 >seq28 Length=22384124 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAA- 3021 || || ||||| || || |||| || ||||| || ||||| || || ||||| ||| | Sbjct 15516623 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCCTGTGGAGGTTC-CGTGAG 15516681 Query 3022 TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 |||||| || | || ||||||||||||| | | ||| || ||||| || || ||||| Sbjct 15516682 TTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGA 15516741 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| ||| | | |||||||| ||| ||||| || ||| | || || | || | Sbjct 15516742 GAACCAGGTTTTCCTACCCATAATCACCGAATTCTGTTTCCCTTCTACTGAAGAGGTTGT 15516801 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | |||||| || || | ||||| |||| Sbjct 15516802 GGTCATTCTTTGGAAATACTTGTATTCGTTCCTGAGCGAGGGCCAGGGCA 15516851 >seq46 Length=11947515 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 6164742 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 6164801 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | ||| || ||| | || || ||||| Sbjct 6164802 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCGTCTCTGGAATGGAG 6164861 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 6164862 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAAGTTGTG 6164921 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 6164922 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCAGGGGCCAGGGCA 6164970 >seq4 Length=32345528 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || |||| || || ||||| | | Sbjct 14353991 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGGTTCCTTGAGT 14354050 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||||| | ||| || ||||| || || | ||| Sbjct 14354051 TCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGGAAAGGAG 14354110 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 14354111 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 14354170 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 14354171 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 14354219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/302 (67%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || ||||||||| | ||||| | | ||||||| ||| | | | | ||| || Sbjct 27012374 CTTATAAACAGAACTGCCTCCCACTATCCAGACCATGTCCACTGTATTTGTTAATTCTGG 27012315 Query 2950 TTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGG 3009 ||| || | || || | ||| | || || || | || ||||| || ||||| || || Sbjct 27012314 TTG-CTCAATAAGTTTTAAGCACCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGG 27012256 Query 3010 TGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTT 3069 ||||| | |||||| || | || ||||||||||||| | | || || ||||| Sbjct 27012255 AGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAATGGTCGATTCTT 27012196 Query 3070 TTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAAC 3129 || | ||||| ||||| ||| | | |||||||| |||| ||||| || |||| | || Sbjct 27012195 CTCTGAAATGGAGAACCAAGTTTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTAC 27012136 Query 3130 CGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGG 3189 || | || | |||||| | || |||||| | ||| || || || ||||| || Sbjct 27012135 TGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGG 27012076 Query 3190 CA 3191 || Sbjct 27012075 CA 27012074 >seq24 Length=21601121 Score = 89.7 bits (98), Expect = 4e-13 Identities = 167/239 (70%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 2889 TCTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGT 2948 ||| |||||| || | ||||| | | ||| ||| || | || | | ||| || Sbjct 2833680 TCTTATAAACGGAACTGCCTCCCACTATCCAAACCCCGTCCACTTTATTTGTTAATTCTG 2833621 Query 2949 ATTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGC 3007 ||| || ||| || || || ||||| || || || | || ||||| | ||||| || Sbjct 2833620 GTTGCTCAATA-AATTTTAAGGCATCATCCAGACTTTTAGCAAGAAAACGAGCTCCCTGT 2833562 Query 3008 GGTGGTTCACGTAA-TTCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCT 3065 || ||||| ||| | |||||| || | || ||||||||||||| | | | ||| || | Sbjct 2833561 GGAGGTTC-CGTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTCTAAAGGTCGAT 2833503 Query 3066 TCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 |||| || || ||||| ||||| ||| | |||||||| |||| ||||| || |||| Sbjct 2833502 TCTTCTCTGGAATGGAGAACCAGGTTTTCCCACCCATAATCACCAAATTCTGTTTACCT 2833444 >seq63 Length=12735091 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || || || || || || | || ||||| || ||||| || || ||||| | | Sbjct 4410469 TTTAAGGCGTCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 4410528 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTC----AGGGAT 3078 ||||| | | || ||||||||||||| | | ||| || ||||| || | | || Sbjct 4410529 TCTCTAATGAGAACTATATTAATTCTGTCCCTTAAAGGTCGATTCTTCTCTGGAATGAAT 4410588 Query 3079 GGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGT 3138 || ||||| || | | |||||||| |||| ||||| || |||| | || || | || Sbjct 4410589 GGTGAACCAGATTTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGT 4410648 Query 3139 AGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 | |||||| |||| |||||| | ||| || || || ||||| |||| Sbjct 4410649 TGTGGTCATTCTCTGGAAATACCTATATTCATTCCTGAGCAGGGGCCAGGGCA 4410701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427767303848640