Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq82 165 8e-36 seq66 129 6e-25 >seq82 Length=8814989 Score = 165 bits (182), Expect = 8e-36 Identities = 414/629 (66%), Gaps = 29/629 (5%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 1281315 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 1281374 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||||||| | || | ||| | ||||||||| || | ||| |||| | ||| Sbjct 1281375 TCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCA 1281434 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || || |||||||| ||||| || |||| ||||| |||| | |||||||| || Sbjct 1281435 AAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTAC 1281494 Query 14034 GATGCTTTTTTGT--TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 14091 | || | ||||| ||||| || ||||| || | || || | | || Sbjct 1281495 GTAGCCTCTTTGTCTTCGAT--CCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAG 1281552 Query 14092 CCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTAT 14151 || ||| ||| | ||||| || | ||||| | ||||| | | | |||||| || | Sbjct 1281553 GCACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGT 1281612 Query 14152 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAA 14211 |||| || | || | ||||||||| ||||||||||||| || || || || ||||| | Sbjct 1281613 CAATGAGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGA 1281672 Query 14212 AGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271 | | | |||||| |||| | | |||| |||||||| | Sbjct 1281673 AATAACGGGCTTCC-----------------GTAA----TCTGAACCAAGTTTTCATTTA 1281711 Query 14272 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14331 |||| | |||||| |||||| | || |||| | | | || || ||||||| Sbjct 1281712 CTATGCTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCAG 1281771 Query 14332 TGTTGAGTTTTTTCCAATCGGATAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCA 14389 || || || ||| || | || ||||| ||||| || | || ||| ||||||| Sbjct 1281772 GCTTCAGGGCTTCCCA--GGGCTGAATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCA 1281829 Query 14390 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449 || ||| | ||||| |||||||| ||| | || ||| |||||||| | Sbjct 1281830 GAAGGAAGCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGAT 1281889 Query 14450 TACAAATCTCGAAGATGTTTCTTTAAGAA 14478 ||||| | | | |||||||| |||| Sbjct 1281890 GACAAAGCGGCAGGGGGTTTCTTTCAGAA 1281918 >seq66 Length=17242564 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||||||||| | Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 10224038 CTACAACACGTTCTCC 10224053 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 10222234 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 10222293 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 10222294 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 10222329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717997671200