Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq82 159 3e-34 seq66 123 2e-23 >seq82 Length=8814989 Score = 159 bits (176), Expect = 3e-34 Identities = 412/629 (66%), Gaps = 29/629 (5%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 1281315 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 1281374 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||||||| | || | ||| | ||||||||| || | ||| |||| | || Sbjct 1281375 TCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCA 1281434 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || || |||||||| ||||| || |||| ||||| |||| | |||||||| || Sbjct 1281435 AAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTAC 1281494 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || | ||||| | |||| ||||| || | || || | | || | Sbjct 1281495 GTAGCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGC 1281554 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 | ||| || | |||||||| | |||| | ||||| | | | |||||| || ||| Sbjct 1281555 ACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCA 1281614 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 || || | || | ||||||||| ||||||||||| | || || || || ||||| ||| Sbjct 1281615 ATGAGGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAA 1281674 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTG--CCAAGTTTTCATTAA 14059 | | ||||| |||| |||| ||||||||||||| | Sbjct 1281675 TAACGGGCTTC-----------------CGTAA------TCTGAACCAAGTTTTCATTTA 1281711 Query 14060 CAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14119 | || | |||||| |||||| | || |||| | | | || || ||||||| Sbjct 1281712 CTATGCTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCAG 1281771 Query 14120 TGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 || || || ||| |||| || ||||| ||||| || | || ||| ||||||| Sbjct 1281772 GCTTCAGGGCTTCCCA--GGGCTGAATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCA 1281829 Query 14178 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14237 || ||| | ||||| |||||||| ||| | || ||| |||||||| | Sbjct 1281830 GAAGGAAGCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGAT 1281889 Query 14238 TACAAATCTTGAAGATGTTTCTTTAAGAA 14266 ||||| | | | |||||||| |||| Sbjct 1281890 GACAAAGCGGCAGGGGGTTTCTTTCAGAA 1281918 >seq66 Length=17242564 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 10224038 CTACAACACGTTCTCC 10224053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 10222234 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 10222293 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 10222294 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 10222329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578821423520