Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq82 215 7e-51 seq114 138 2e-27 seq66 129 8e-25 seq133 114 2e-20 seq71 107 3e-18 seq4 98.7 1e-15 >seq82 Length=8814989 Score = 215 bits (238), Expect = 7e-51 Identities = 482/716 (67%), Gaps = 11/716 (2%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| ||||||||||| || | ||| ||| ||| || ||| | | |||||| | Sbjct 1280985 TTAGAAGTCAACATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCATTCCCATCCT 1281044 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || | || | | || || || || |||||||| ||||| | ||| ||| || Sbjct 1281045 CTGATACTTGCCTAGTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC-AGTGAAATAGCCTC 1281103 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 1281104 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 1281163 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| ||||| | |||||| | || ||||||| | |||||||| || || || | Sbjct 1281164 TCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCTC 1281223 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT-ATAATAG 42014 |||| || ||| | || || || || ||||| | | || ||| || || Sbjct 1281224 CACTGTCAGGGCCTCCGTGAGGAACTCGTGTTCTGTCCTAGCTGCA-CTGACGATTATTT 1281282 Query 42015 ATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | | ||| | | || | || | | | | | ||||| ||||||| || || || Sbjct 1281283 CTTTGACTCTCTGCTCCGAACGTTTG-TGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 1281341 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || ||||| | |||||| ||||| ||||| | ||| |||||||| ||||| |||| ||| Sbjct 1281342 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACATG 1281401 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 || || || || || ||||| |||| ||| ||||| || |||||||||||||||||||| Sbjct 1281402 AGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 1281461 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 42250 |||| |||||||| | | | ||||| || | | | |||| | |||| Sbjct 1281462 GCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCGC 1281521 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 |||||||| ||| ||| |||||| |||||| || || ||||||| ||||| | Sbjct 1281522 AAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAGGAAT 1281581 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | |||| || |||||||| || || || || | ||||| | |||||| ||||| Sbjct 1281582 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCATTTCAGAATGT 1281641 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 |||||||| | ||| || || || || |||||| | | ||| || |||| ||| || Sbjct 1281642 ATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACGGGCTTCCGTAATCTGAAC 1281697 >seq114 Length=7505490 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | | Sbjct 195372 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 195431 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 195432 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 195491 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 195492 CTGTTTCTTATACCAT 195507 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| | |||||| || || || || ||||||| Sbjct 200086 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 200145 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || ||||| || ||||| || | Sbjct 200146 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 200205 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 | | | |||||||| |||||||| | ||||| || ||||| || || || Sbjct 200206 ACCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGG 200257 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 204653 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 204712 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 204713 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 204772 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 204773 TCCAGGTAAATAGC 204786 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| | || | || || ||||| || | || ||||| || || |||||| Sbjct 212422 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAAC 212481 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || |||||||| |||||||| | || ||||| || || || Sbjct 212482 CACTTCTCAGAGAGAAGGTTGTACGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATG 212541 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 212542 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 212580 >seq66 Length=17242564 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || |||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 42207 C 42207 | Sbjct 10224038 C 10224038 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 10225902 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10225961 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| || |||| ||| |||||| Sbjct 10225962 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 10226007 >seq133 Length=6119822 Score = 114 bits (126), Expect = 2e-20 Identities = 182/257 (71%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855 |||||| |||||||| ||| ||| ||| || || || ||||| | ||| ||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAA-TCC-CTTTCAGTGTCATCTAAAACTTGAACTTCC 1720725 Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915 || | |||||| ||| ||||||||| | | || ||||| || |||| ||| ||| | || Sbjct 1720724 TCTATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTG 1720665 Query 39916 ACATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 39975 || | ||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 1720664 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1720605 Query 39976 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 40032 || ||||| ||||| |||||| ||| || |||| | || ||||| | ||| Sbjct 1720604 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1720545 Query 40033 GCTATTCTACCATAGCA 40049 |||| ||| |||||||| Sbjct 1720544 GCTACTCTCCCATAGCA 1720528 >seq71 Length=10149521 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 1782286 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1782227 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 1782226 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1782168 >seq4 Length=32345528 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||||| | ||| ||||| || Sbjct 14664409 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 14664468 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || || Sbjct 14664469 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 14664528 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | ||| | ||| ||| ||||| || | || | | ||||| ||||||||||| Sbjct 14664529 TTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAACAACATTTCCTCTATAATCTTC 14664588 Query 39978 GTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGC 40034 ||||| ||||| |||| | ||| || |||| | || ||||| | ||||| Sbjct 14664589 ATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 14664648 Query 40035 TATTCTACCATAGCA 40049 || ||| |||||||| Sbjct 14664649 TACTCTCCCATAGCA 14664663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125206747680