Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq82 102 1e-16 >seq82 Length=8814989 Score = 102 bits (112), Expect = 1e-16 Identities = 231/344 (67%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || || || |||||||| | || ||| | || || |||||| || | || ||| Sbjct 1281673 TTCTATGGCTTCCAAATTGCCGTGGAAAACATACATTCTGAAATGGACAGTCTCCTCATT 1281614 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| |||||| ||| | ||| | || || | |||| || || | || || || Sbjct 1281613 GACACTTACATTAAAGATTC-CAAAGAAAGGGAATTCCTCTTCAATGCCAGTGAGACAGT 1281555 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 ||| ||| || || ||| | |||| | || ||||||| ||| | || || | Sbjct 1281554 GCCTTCTGTAAAGAAGGCGGCAGATTGGGCCTTGCGCCGGATCGAAGACAAAGAGGCTAC 1281495 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 ||||| || | | || || || ||||| | || || ||||||||||| ||| ||| Sbjct 1281494 GTACGGAGAACGTGTCGTAGCCTTTGCCGCAGCGGAAGGAATCTTCTTTTCTGGTTCTTT 1281435 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----A 125529 ||| | | || ||||||||||| || ||||||||| |||| || |||| | | Sbjct 1281434 TGCATCTGTATTGTGGCTCAAGAAACGAGGACTCATGTCCGGCCT----CACATTTTCCA 1281379 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || |||| |||||||||| ||||||||||||||||| Sbjct 1281378 ATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC 1281335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043748915680