Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq33 93.3 3e-14 seq265 89.7 4e-13 >seq33 Length=16598743 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | |||||| |||| || ||||| |||||||| || Sbjct 8627183 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGA 8627124 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | | | | ||| ||| |||||||| | |||| | ||| ||||| || Sbjct 8627123 CAGAGTACGTCCATTTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAGG 8627064 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| ||||| || ||| ||||||| ||||||| ||||| || || Sbjct 8627063 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTTGAC 8627004 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || ||||| || || || || || |||||||| Sbjct 8627003 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAATATCTGCATATT 8626953 >seq265 Length=2252016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| || || | |||||| ||||| || | ||| |||||| || Sbjct 744518 CCACCACGGAATCTCAACACAAGATGAAGAGTGGACTCCTCTTGAGTGTTGTGGTCCA-- 744461 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||| |||||||| | |||| | ||| ||||| ||| Sbjct 744460 --AGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 744403 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||||||| ||||| | ||||| ||| || Sbjct 744402 ATTCCTTCCTTGTCCTGGATCTTGACCTTTACATTTTCTGTCGTATCCGAGGGTTCGACC 744343 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || | ||| || || ||||| || || |||||||| |||||||| Sbjct 744342 TCGAGAGTGACGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATATT 744293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171837349588