Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq71 114 1e-20 seq66 107 2e-18 >seq71 Length=10149521 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 1782288 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1782229 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1782228 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1782169 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 1782168 CCACCACCCTTTCCCC 1782153 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||||| | || |||| ||| || || | || |||||| | | Sbjct 1798494 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 1798436 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 1798435 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTT 1798376 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 1798375 TCCATAAAATCAAAGGGATTTT 1798354 >seq66 Length=17242564 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || || || || |||||||| || || ||||| || ||||||||||| Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 10224039 Query 13295 ATCAAC 13300 | |||| Sbjct 10224040 A-CAAC 10224044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973638666536