Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq83 107 1e-18 seq58 100 2e-16 >seq83 Length=9572586 Score = 107 bits (118), Expect = 1e-18 Identities = 183/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| || | || | || ||||| | |||||| | || | ||||||||||| Sbjct 1005479 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 1005537 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || ||||||| |||||| ||| | || || || | || || || | || | Sbjct 1005538 AAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 1005597 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| ||||| || |||||||||||||| |||| || | | ||| || Sbjct 1005598 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCCGT 1005657 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| ||||| || || || || | || ||||||| || || || Sbjct 1005658 -CTCCTGACCTCTGGTACAGCTG-CAGGACAG-TCATGGTTCATCACGTAGAAGTGGCAA 1005714 Query 25627 ATGGTGTAGCACGGAGGAAG 25646 | || | |||| | || || Sbjct 1005715 AGGGCATGGCACAGGGGCAG 1005734 >seq58 Length=13669011 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 13147999 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 13147940 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 13147939 T-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 13147881 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | |||||| || || || || || Sbjct 13147880 AAGGGCATGGCACGGGGGTAGGGCCATGAG 13147851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340130685427764