Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq933 82.4 4e-11 seq281 82.4 4e-11 seq56 82.4 4e-11 seq20 82.4 4e-11 seq1 82.4 4e-11 >seq933 Length=18306 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9985 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9926 Query 11528 CC 11529 || Sbjct 9925 CC 9924 >seq281 Length=1713358 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| |||||||||| ||||||| ||||||||||||| ||||||| ||| || Sbjct 1466457 TGGCCCATATGGGGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCGAC 1466516 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 1466517 TGAGCTAACAGGCC 1466530 Score = 82.4 bits (90), Expect = 4e-11 Identities = 79/100 (79%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC-GCGTTATTAGCACGACGCTCTRACC 11512 |||||||| || |||||||||| || |||| ||||||||||||| ||||||| ||| Sbjct 1469583 ATTGGCCCGTGTGGGGATCGAACCCACGGCCTTGAGCGTTATTAGCACCACGCTCTAACC 1469642 Query 11513 AACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATC 11552 | ||||||||| ||||| || | ||||| ||||| || Sbjct 1469643 ATCTGAGCTAACCGGCCG--GAACAATGTGAATTTTCTTC 1469680 >seq56 Length=13463776 Score = 82.4 bits (90), Expect = 4e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 20949 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 21008 Query 11515 CTGAGCTAA 11523 ||||||||| Sbjct 21009 CTGAGCTAA 21017 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 45059 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACTACGCTCTAGCCA 45000 Query 11514 ACTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 44999 ACTGAGCTAACCGGCCG 44983 >seq20 Length=22150888 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10828237 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10828178 Query 11528 CC 11529 || Sbjct 10828177 CC 10828176 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10852590 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10852649 Query 11528 CC 11529 || Sbjct 10852650 CC 10852651 >seq1 Length=41399143 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 38486431 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 38486372 Query 11528 CC 11529 || Sbjct 38486371 CC 38486370 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485884210768