Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq82 120 3e-22 seq140 114 1e-20 seq71 96.9 4e-15 >seq82 Length=8814989 Score = 120 bits (132), Expect = 3e-22 Identities = 321/485 (66%), Gaps = 7/485 (1%) Strand=Plus/Plus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||| | |||||||| | ||||| | | | ||| || || || || || ||||| ||| Sbjct 1281028 GACGTCATTCCCATCCTCTGATACTTGCCTAGTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1281087 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 || | ||| |||| |||||||| |||||||||||||| | | || | || || || Sbjct 1281088 TC-AGTGAAATAGCCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 1281146 Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 ||||| || | |||| ||| ||||| || ||||| | || || ||| || | || Sbjct 1281147 CCCAGCTC-CAGCATAAGTCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCA 1281205 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 |||||| ||||| | | || | || || | || | || | |||| | | Sbjct 1281206 ATTCATCCCGATGAGCTCCACTGTCAGGGCCTCCGTGAGGAACTCGTGTTCTGTCCTAGC 1281265 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466 || || || ||||| || || || | | | | | | ||||| Sbjct 1281266 TGCACTGACGAT--TATTTCTTTGACTCTCTGCTCCGAACGTTTGTGTAGCAGGTGTTTG 1281323 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| || ||||| ||||| || ||||| || || || || || | |||||| ||| Sbjct 1281324 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 1281383 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 ||||| | |||| ||| | ||||| || || | ||| |||| || ||||| | || Sbjct 1281384 AATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCA 1281443 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 |||||||| || || || | || ||||| || || | ||||| ||||| |||| ||| Sbjct 1281444 GAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGCCTCT 1281503 Query 21647 TTATC 21651 || || Sbjct 1281504 TTGTC 1281508 >seq140 Length=6810376 Score = 114 bits (126), Expect = 1e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | ||||| ||| | ||||| ||||| ||||| | || || |||||| Sbjct 6297237 GTTTCAAACTGACCAAGACCAGCTTCTAATGAGGTACAGAATGTCTGGCTGAACGTCCAA 6297296 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||||||||| ||||| || |||| |||||||||||||||| | |||||| Sbjct 6297297 TTCCTTGCGTCTTCAGAAAAATAAAAACACTTATTTCCAAATCCAATCCATTCTTTTGGG 6297356 Query 130785 CAAGTAACATA 130795 || |||||||| Sbjct 6297357 CAGGTAACATA 6297367 >seq71 Length=10149521 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 1798494 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1798435 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 1798434 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 1798375 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 1798374 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 1798344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889709868320