Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq82 223 4e-53 seq66 138 1e-27 seq114 134 2e-26 seq71 107 2e-18 seq133 105 8e-18 seq4 91.5 2e-13 seq30 82.4 1e-10 >seq82 Length=8814989 Score = 223 bits (246), Expect = 4e-53 Identities = 612/935 (65%), Gaps = 32/935 (3%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 ||| ||||||||||| || | ||| ||| ||| || ||| | | |||||| | Sbjct 1280985 TTAGAAGTCAACATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCATTCCCATCCT 1281044 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || | || | | || || || || ||||| || ||||| | ||| ||| || Sbjct 1281045 CTGATACTTGCCTAGTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC-AGTGAAATAGCCTC 1281103 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 1281104 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 1281163 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| || || |||||||| | || ||||||| | |||||||| || || || | Sbjct 1281164 TCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCTC 1281223 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT-ATAATAG 33253 |||| || ||| | || || || || ||||| | | ||| ||| || || Sbjct 1281224 CACTGTCAGGGCCTCCGTGAGGAACTCGTGTTCTGTCCTAGCTGCA-CTGACGATTATTT 1281282 Query 33254 ATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 | | || | | || | || | | || | | ||||| ||||||| || || || Sbjct 1281283 CTTTGACTCTCTGCTCCGAACGTTTG-TGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 1281341 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || ||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||| ||| Sbjct 1281342 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACATG 1281401 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 || || || || || ||||| |||| || || || || |||||||||||||||||||| Sbjct 1281402 AGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 1281461 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33489 |||| |||||||| | | | ||||| || | | | |||| | |||| Sbjct 1281462 GCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCGC 1281521 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 |||||||| ||| ||| |||||| |||||| || || ||||||| ||||| | Sbjct 1281522 AAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAGGAAT 1281581 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | |||| || |||||||| ||||| || || | ||||| | |||||| ||||| Sbjct 1281582 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCATTTCAGAATGT 1281641 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 |||||||| | ||| || || || || |||||| | | || || |||||||| | Sbjct 1281642 ATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACGGGCTTCCGTAATCTGAA----- 1281696 Query 33670 GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33729 |||| |||||||| ||||| | ||||| |||||| | || ||| Sbjct 1281697 ----------------CCAAGTTTTCATTTACTATGCTATCACTTGCTGCAGAGAAAGCC 1281740 Query 33730 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 33789 | ||| | ||| || | || || || | || | ||| | || || Sbjct 1281741 AGAACACACGAAGTGAAACATCTCTCTTCAGGCTTCAGGGCTTCCCAGGGCTGAATGTCC 1281800 Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || || | || | || || ||||||| || || ||||| || || |||||||| | | Sbjct 1281801 TTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCTTATACATCTGC 1281860 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || | ||| |||| ||| || || || ||||| Sbjct 1281861 CAAACATCACGGTATTCGATAGGAAAGATGACAAA 1281895 >seq66 Length=17242564 Score = 138 bits (152), Expect = 1e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||| ||||| || ||||| || || || |||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||||||||||| Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 33446 C 33446 | Sbjct 10224038 C 10224038 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 10225902 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10225961 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 10225962 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTC 10226021 Query 33684 CGCC 33687 | || Sbjct 10226022 CACC 10226025 >seq114 Length=7505490 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 195372 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 195431 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 195432 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 195491 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 195492 CTGTTTCTTATACCATA 195508 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 204649 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 204708 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 204709 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 204768 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 204769 AGGCTCCAGGTAAATAGC 204786 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || | |||||| || || || || || || | Sbjct 200086 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 200145 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 200146 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 200205 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | |||||||| ||||| || | ||||| || ||||| || || || | ||| Sbjct 200206 ACCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 200263 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 || ||||| ||| | || |||||| ||| | | | ||| |||||||| ||| || Sbjct 208234 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 208293 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 || || ||||| || | |||| |||||||| ||||| || ||||||||||| |||| Sbjct 208294 GATATCAATGCACACTGCTTTAGAGTGTCATAAATACCTTCAATGCTATCATCTTTCATA 208353 Query 63576 TTAAGTAGAAAACAGCTA 63593 | || || ||||||||| Sbjct 208354 CTCAGAAGGAAACAGCTA 208371 >seq71 Length=10149521 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 1782286 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1782227 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1782226 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1782168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || | || |||| Sbjct 1777930 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 1777871 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 |||| || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 1777870 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 1777813 >seq133 Length=6119822 Score = 105 bits (116), Expect = 8e-18 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || |||||||| ||| ||| ||| | ||| ||||| | ||| ||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAATCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 1720725 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| ||||||||| | | || ||||| || |||| ||| || | || Sbjct 1720724 TCTATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTG 1720665 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | ||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 1720664 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1720605 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 1720604 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1720545 Query 31282 GCTATTCTACCATAGCA 31298 |||| ||| |||||||| Sbjct 1720544 GCTACTCTCCCATAGCA 1720528 >seq4 Length=32345528 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 14664409 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 14664466 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| | | || ||||| || |||| ||| || | || Sbjct 14664467 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 14664526 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | ||| | ||| ||| ||||| || | || | | ||||| ||||||||| Sbjct 14664527 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAACAACATTTCCTCTATAATCT 14664586 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||| | ||| || | |||| | || ||||| | ||| Sbjct 14664587 TCATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 14664646 Query 31282 GCTATTCTACCATAGCA 31298 |||| ||| |||||||| Sbjct 14664647 GCTACTCTCCCATAGCA 14664663 >seq30 Length=16613269 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 31086 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31145 ||||| | ||| ||||| || | |||||| ||| |||| ||| | | || || || || Sbjct 1726891 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATGTGTTCACAAATGAGATGTGC 1726832 Query 31146 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31205 |||| ||| | | || || | |||| | ||| ||| ||||| || | | || Sbjct 1726831 AATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAATACC 1726772 Query 31206 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31262 | |||||| ||||||||||| ||||| |||| | |||||| ||| || | |||| Sbjct 1726771 AACGTTTCCTCTATAATCTTCATCTATGACACTGGCTCCTACATCTATGAAGTGTTTTGC 1726712 Query 31263 GGACAGACCAGACCTAGGAGCTATTCTACCATAG 31296 | || ||||| | | ||||| ||| |||||| Sbjct 1726711 AGCCAAGCCAGAACGTGCAGCTACTCTCCCATAG 1726678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934211550880