Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq33 102 5e-17 seq87 95.1 8e-15 seq117 87.8 1e-12 seq27 82.4 5e-11 seq20 82.4 5e-11 >seq33 Length=16598743 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||| | |||| | | Sbjct 8627168 CAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATT 8627109 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 8627108 TTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAGGAATTCCTTCCTTGTC 8627049 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| || || || | || || || Sbjct 8627048 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTGATGGT 8626989 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| ||||||||||||||||| || Sbjct 8626988 CTTCCCCGTCAGGGTCTTCACGAATATCTGCATATT 8626953 >seq87 Length=9762952 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||| Sbjct 7158263 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATGGGTCTCGA 7158204 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 7158203 GCTGGTATTTAGCTTTA 7158187 >seq117 Length=6612941 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| | |||||||||| |||| ||||||| |||||||| ||||| || |||||| | Sbjct 807532 AAGTCTGTTCCCTTGGTTGTGTTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 807591 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| || ||||||||||||||| Sbjct 807592 TCATCCATTCATGTGCACCACTAATTAGATGAC 807624 >seq27 Length=17078927 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| ||||||||| | | | || || | ||| || || ||||| Sbjct 16539943 CTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 16540002 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | ||| || || | |||| |||||||| || || || ||| ||||| Sbjct 16540003 GATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACATT 16540062 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | |||||| | |||||| | | || || || || || |||| ||| ||| Sbjct 16540063 TTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCCT 16540122 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 16540123 GAAAATCTGCATCTT 16540137 >seq20 Length=22150888 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 5019757 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 5019698 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| || ||||| || || | || || || | |||| Sbjct 5019697 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 5019638 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || |||||| |||| || || || | || || Sbjct 5019637 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 5019578 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| |||||||| |||||||| || Sbjct 5019577 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 5019528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940390942108