Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq82 156 5e-33 seq66 100 3e-16 >seq82 Length=8814989 Score = 156 bits (172), Expect = 5e-33 Identities = 409/620 (66%), Gaps = 27/620 (4%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATT 93138 ||| |||| | ||| |||||||| |||||||| ||||||| || || || | |||| Sbjct 1281321 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCATT 1281379 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 | ||||| | || | | |||||||||||||||||||| |||| || |||||| Sbjct 1281380 GGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGA 1281439 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||||||||| || || |||||| | || ||||| || || | |||||| | | | || Sbjct 1281440 ACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGC 1281499 Query 93259 GGAATT-ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 || || | ||||| || |||||||| || ||||| | | |||| | || Sbjct 1281500 CTCTTTGTCTTC-GATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTG 1281558 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | || | || || || ||| | || | || | |||||| ||||| || || || | Sbjct 1281559 TCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGA 1281618 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||| | |||||||||||| | || |||| ||||||||||| || |||||| | | Sbjct 1281619 GGAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAAC 1281678 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 |||||||| ||||| || | || |||||||| ||||| | Sbjct 1281679 GGGCTTCCGTAATCTGAAC--------------------CAAG-TTTTCATTTACTATGC 1281717 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 ||| ||||||| | ||||||| | | | | ||| | |||| ||| || | Sbjct 1281718 TATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCTTCAGGCTTCA 1281777 Query 93558 GCTTATCCCA-ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | ||||| | || | || || ||||| || | || || | ||||| || || Sbjct 1281778 GGGCTTCCCAGGGCTGA-ATGTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAA 1281836 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || || ||||| || ||||| | ||| | || | |||| || ||||| |||||||| Sbjct 1281837 GCCTCCGCTTTCTTATACATCTGCCAAACATCACGGTATTCGATAGGAAAGATGACAAAG 1281896 Query 93677 CGATTAGGGTTATCTTTTAG 93696 || ||| | ||||| || Sbjct 1281897 CGGCAGGGGGTTTCTTTCAG 1281916 >seq66 Length=17242564 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | |||||||||||| |||||||| ||||| || ||| Sbjct 10223938 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTGAGCCAGAATATCGATGCA 10223997 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 10223998 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACAACACGTTC 10224050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 10225900 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 10225959 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 10225960 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 10226009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849189452320