Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq84 96.9 3e-15 seq20 89.7 4e-13 seq53 87.8 2e-12 seq166 86.0 5e-12 >seq84 Length=11797838 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| | || ||||| ||| Sbjct 5420596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 5420655 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 5420656 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 5420715 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 5420716 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5420775 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || | || |||| || | |||||| Sbjct 5420776 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTAAGGGGAGGT 5420823 >seq20 Length=22150888 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 5019525 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 5019584 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || ||||| || || || || Sbjct 5019585 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCA 5019644 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||||||| | || ||| |||||| |||| ||| Sbjct 5019645 GACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGAT 5019704 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 5019705 TACAACATCCAGAAAGAGTCGACC 5019728 >seq53 Length=16102195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || ||||||| || || ||| || Sbjct 15465505 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 15465446 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| || | || || || || || |||||||| | ||||| || || Sbjct 15465445 TCGGATACAACAGAAAACATAAAGGCCAAGATCCAGGACAAGGAAGTAATTCCTCCTGAC 15465386 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| ||| | || ||| || || | || || || Sbjct 15465385 CAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACCAC 15465326 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 15465325 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 15465275 >seq166 Length=5848183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 |||||| ||||| || || | || || || || |||||||||| || || || | Sbjct 1459058 GCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCAAACTCAGTGT 1459117 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| || || ||||| ||||| |||||| |||| || | || | ||||| Sbjct 1459118 CACCACTGAGAATGTCAAAGCCAAAATCAAAGACACTGAGGACATCCTGCCTCACCAACA 1459177 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 |||| || ||||| | ||||||| | |||||| ||| || |||| || || || || Sbjct 1459178 GAGTCTGATTTTTGCAGACAAACAGCT-GAGGATGGCCGTACTCTCTCAGACTATAATAT 1459236 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||||||| |||| || || Sbjct 1459237 CCAGAAAGAATCCACCCTACACTTGGT 1459263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719467454420