Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq82 111 3e-19 >seq82 Length=8814989 Score = 111 bits (122), Expect = 3e-19 Identities = 242/356 (68%), Gaps = 10/356 (3%) Strand=Plus/Minus Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 ||||| |||||||| || ||| | || ||| | || ||||| || || | || ||| Sbjct 1281673 TTCTATGGCTTCCAAATTGCCGTGGAAAACATACATTCTGAAATGGAC---AGTCTCCTC 1281617 Query 42573 A---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACG 42629 | |||| ||||| ||| || || | | || ||||| |||| ||||| Sbjct 1281616 ATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTCCTCTTCAATGCCAGTGAGACA 1281557 Query 42630 ATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC-GACGC 42688 |||| | | |||||| ||| || ||||| | | ||||||| || | || || Sbjct 1281556 GTGCCTTCTGTAAAGAAGGCGGCAGATTGGGCCTTGCGCCGGATCGA-AGACAAAGAGGC 1281498 Query 42689 AACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGC 42748 |||| ||| || | | ||||||||| |||| | || || |||||||| || || | Sbjct 1281497 TACGTACGGAGAACGTGTCGTAGCCTTTGCCGCAGCGGAAGGAATCTTCTTTTCTGGTTC 1281438 Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGA 42807 || || || | || ||||||||| | ||| || ||| |||| ||||| || || | Sbjct 1281437 TTTTGCATCTGTATTGTGGCTCAAGAAACGAGGACTC-ATGTCCGGCCTCACATTTTCCA 1281379 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | ||||| || ||||| |||||||| | || | |||||||||||||| ||||| Sbjct 1281378 ATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC 1281323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319510527680