Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq58 91.5 1e-13 seq83 84.2 2e-11 >seq58 Length=13669011 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 13148002 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 13147943 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGT 20351 |||||||| |||||||| |||||||| ||||| |||||||||| Sbjct 13147942 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGT 13147900 >seq83 Length=9572586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| || || ||||||||||| ||||| | | | || || || | || || || | || Sbjct 1005536 GTAAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 1005595 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || || | |||| ||||||||| ||||| || | || | || ||| Sbjct 1005596 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCC 1005655 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAG 20343 |||||| |||||||| |||||||| ||||| || Sbjct 1005656 GTCTCCTGACCTCTGGTACAGCTG-CAGGACAG 1005687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441363597377120