Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20 132 1e-25 seq33 131 4e-25 seq34 111 4e-19 seq8 107 5e-18 seq27 104 6e-17 seq10 96.9 8e-15 seq84 84.2 5e-11 >seq20 Length=22150888 Score = 132 bits (146), Expect = 1e-25 Identities = 149/198 (75%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| ||||| || ||||| | ||||| ||||| ||| Sbjct 5019721 TCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 5019662 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || ||||| ||||||||||| || || |||||| Sbjct 5019661 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 5019605 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 5019604 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 5019545 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 5019544 ACGAAGATCTGCATTTTG 5019527 >seq33 Length=16598743 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 8627182 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 8627123 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| | ||| ||| || || || |||||||| | || || | || Sbjct 8627122 AGAGTACGTCCATTTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAGGA 8627063 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || || || || |||||||| | ||| | || || Sbjct 8627062 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTTGACC 8627003 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 8627002 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAATATCTGCAT 8626956 >seq34 Length=14701056 Score = 111 bits (122), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| | ||| || || || | || ||| | |||||||| | ||||| ||||| ||| Sbjct 8730372 TCTTTCTAGATGTTGTAATCAGAAAGAGTGTGGCCGTCTTCCAGCTGTTTGCCTGCAAAG 8730313 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||| ||||||||| || || |||| ||| Sbjct 8730312 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTT-ATCCTGGATCTTGGCCTTCATGTTC 8730254 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || || |||| ||||| || ||||| ||||| ||| Sbjct 8730253 TCGATGGTGTCACTGGACTCCACCTCCAGGGTGACAGTCTTGCCAGTCAGGGTCTTCACG 8730194 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 8730193 AAGATCTGCAT 8730183 >seq8 Length=29698465 Score = 107 bits (118), Expect = 5e-18 Identities = 142/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| ||||| ||| Sbjct 12480176 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAAG 12480235 Query 288343 ATCAGACGCTG-TTGAGAATCTG--GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 | || | ||| ||| || | |||| ||||||||||||||||| || || | ||| Sbjct 12480236 AGGAGCCTCTGCTTG----TCAGCAGGATGCCTTCTTTATCCTGGATCTTGGCCTGCACA 12480291 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || ||||| | || || || || ||||| ||||| | |||||| ||||| Sbjct 12480292 TTCTC---AGGCTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTC 12480348 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 12480349 ACGAAGATCTGCAT 12480362 >seq27 Length=17078927 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || | || || || | ||| || || || ||| Sbjct 16539944 TCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAG 16540003 Query 288343 ATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | |||| | || | ||||||||||||||||| ||||| || || || || Sbjct 16540004 ATCAGTCTTTGCTGGTCAGGA---GGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACA 16540060 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 |||||||| | ||| | ||| || | ||| ||||| |||||||| ||||| ||||| Sbjct 16540061 TTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTC 16540120 Query 288460 ACGAATATCTGCAT 288473 ||| |||||||| Sbjct 16540121 CTGAAAATCTGCAT 16540134 >seq10 Length=27321270 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/208 (71%), Gaps = 11/208 (5%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||||| ||| || ||||| || || ||||| | || ||||| ||||| | | Sbjct 23648174 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACGTCCATCTTCCACT 23648229 Query 288328 TGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || || || || |||||||| | |||| | || | || |||||||| ||||||||| Sbjct 23648230 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA---GGAATTCCTTCCTTATCCTGG 23648286 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || || |||||| | | ||| | ||| ||||| || ||||| ||| || Sbjct 23648287 ATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGATGGTCATC 23648346 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCA 288472 || | || ||||| | ||| ||||||| Sbjct 23648347 CCTGGAAG-GTCTTCATGAAAATCTGCA 23648373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || |||| | || | || | Sbjct 20770775 CCACCACGAAGTCTCAACACAAGATGAAGGATGGACTCCTTTTCAGTGTTGTGTTCAGAC 20770716 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| | || || || || | | || || | | || Sbjct 20770715 AAAGTACGTCCATCTTCCAGTTGCTGGCCAGCAAAACTCGGTCTTTGCTGGGCAGGAGGA 20770656 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| | |||||||| || || || ||||||||||| | ||| | ||| || Sbjct 20770655 ATTCCTTCCTCGTCCTGGATCTTGGCCTTTACGTTTTCTATCGTATCCGAGGGTTCGACC 20770596 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 20770595 TCGAGATTGACGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 20770549 >seq84 Length=11797838 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| || || ||| Sbjct 5420558 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAG 5420499 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || ||||| ||||||||||| || || |||||| Sbjct 5420498 ATCAGCCTCTGCTGG---TCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 5420442 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || || || | || || | || || || || ||||| || Sbjct 5420441 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 5420401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629189310904