Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq84 86.0 4e-12 >seq84 Length=11797838 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 39502 AAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGT 39561 || ||||| |||| |||| |||| |||||| || || || || || | || ||| Sbjct 5420813 AAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 5420754 Query 39562 TCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCT 39621 |||| |||| ||||||||| |||| || || | |||||| || | ||| | ||| || Sbjct 5420753 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 5420694 Query 39622 TTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCACGTCCAAAG 39679 ||||| || || || | || | | ||||| || ||| |||| ||||| | Sbjct 5420693 TTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCT--CCACCTCCAAGG 5420636 Query 39680 TAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || || || || |||||||||||||| Sbjct 5420635 TGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 5420596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362538410244