Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_015323.1 Length=45667 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 6e-12 seq133 80.6 8e-11 >seq4 Length=32345528 Score = 84.2 bits (92), Expect = 6e-12 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 985 TATGGGAGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCG 1044 ||||||||| | ||||| || || || ||||||||||| ||| ||||||||||| || Sbjct 14664660 TATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTGGGAGCT 14664601 Query 1045 GGTGTGATAGATGCTGATTATCGCGGTGAAGTGAAGGTGCTCT--TGTTCAATTTTTCGC 1102 ||||| ||||||| |||||| | | ||| || | || | | |||| |||||| Sbjct 14664600 GGTGTCATAGATGAAGATTATAGAG--GAAATGTTGTTGTTGTACTGTTTAATTTTGGCA 14664543 Query 1103 AACATGCGTTCAACGTTCGGAAGGGAGACCGTATCGCTCAGCTCGTTGTTGAGCGAATCT 1162 || | |||| | || ||||| || || || || |||||| || ||| || || | Sbjct 14664542 AAGAAAAGTTCGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATAT 14664483 Query 1163 TT 1164 || Sbjct 14664482 TT 14664481 >seq133 Length=6119822 Score = 80.6 bits (88), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 985 TATGGGAGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCG 1044 ||||||||| | ||||| || || || ||||||||||| ||| |||||||| || || Sbjct 1720531 TATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCT 1720590 Query 1045 GGTGTGATAGATGCTGATTATCGCGGTGAAGTGAAGGTGCTCT--TGTTCAATTTTTCGC 1102 ||||| ||||||| |||||| | | ||| || |||| | | |||| |||||| Sbjct 1720591 GGTGTCATAGATGAAGATTATAGAG--GAAATGTTGGTGTTGTACTGTTTAATTTTGGCA 1720648 Query 1103 AACATGCGTTCAACGTTCGGAAGGGAGACCGTATCGCTCAGCTCGTTGTTGAGCGAATCT 1162 || | |||| | || ||||| || | || || |||||| || ||| || || | Sbjct 1720649 AAGAAAAGTTCGAAGTCAAAAAGGGTGATGGAATTGCACAGCTCATTTGTGAACGTATAT 1720708 Query 1163 TT 1164 || Sbjct 1720709 TT 1720710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146009907851464