Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq215 132 6e-26 seq156 93.3 5e-14 >seq215 Length=2740087 Score = 132 bits (146), Expect = 6e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | ||||| || |||| | ||| ||| ||| ||||| Sbjct 794270 ACTGAGGAACTTACAAGTTGTCCCTCACACCAAATGGTCTAATAATAGGACCTGTGAGAT 794329 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 || |||||||| ||||| ||| |||| ||||| ||||||| |||| ||| ||| || Sbjct 794330 CCTCCTGACCTGCTCTGTGGAGAATCCAAATGATAACATCTTATTCAGGTGGCAGGTCTC 794389 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| | | || | ||||| || | |||||||||||||| || || Sbjct 794390 AGGAAACACACTTCAAAGTGAAGCAAACCTTACTATCTCCTGGGACCCCAAGAGTTTCAA 794449 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||| | || || || ||||| |||||| || ||| | ||||| Sbjct 794450 TGAAGAGACCTACACCTGCGTAGCTGAGAATGCTGTCAGCAATTCATCCTTCTCTGTCTC 794509 Query 2447 GGCCCAGA 2454 | ||||| Sbjct 794510 TGTCCAGA 794517 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| |||| ||||| ||||| || |||||||| |||||| Sbjct 791191 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCCTGGGGGAGTCTGTAACA 791250 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || |||||||||| |||||||||||||| Sbjct 791251 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACGTCCATCACCTGGC 791299 >seq156 Length=4513605 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| | |||| ||||| |||| ||||| ||||| || |||||||| ||||| Sbjct 984538 GTTTCACAAATCGGCTCAACCCCATTGATTGTGAACGGGGTCCTGGGGGAGTCTGTAACT 984597 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || ||| |||||| |||||||||||||| Sbjct 984598 CTCACCCTGAAGTTTCCTGTGGAAGAGGAGATCACGTCCATCACCTGGC 984646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629270079445280