Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq82 147 3e-30 seq66 111 2e-19 seq71 107 2e-18 >seq82 Length=8814989 Score = 147 bits (162), Expect = 3e-30 Identities = 299/448 (67%), Gaps = 21/448 (5%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| || ||||| || || | |||||| Sbjct 1281320 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATT 1281379 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || | ||| | |||| ||| || | ||| |||| | ||||||||| Sbjct 1281380 GGAAAATGTGAGGCCGGACATGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGA 1281439 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| |||| ||||| ||||| | |||| ||| | || | Sbjct 1281440 ACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGC 1281499 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||| | |||||||||| || ||| | | ||| Sbjct 1281500 CTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGT 1281559 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 ||| | || || ||||| || | |||||| |||| | || ||||| ||||| || Sbjct 1281560 CTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAG 1281619 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||| | ||||||||| || || ||||| | || || || || ||||| ||| | | Sbjct 1281620 GAGACTGTCCATTTCAGAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACG 1281679 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | ||| ||| | | ||||||||||| ||||| | Sbjct 1281680 GGCTTCCG-TAA--------------------TCTGAACCAAGTTTTCATTTACTATGCT 1281718 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACA 37610 |||||| |||||| ||||||| |||||| Sbjct 1281719 ATCACTTGCTGCAGAGAAAGCCAGAACA 1281746 >seq66 Length=17242564 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | |||||| ||||| || | || ||||| | |||| |||||| Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 10224039 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 10224040 ACAACACGT 10224048 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 10222236 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 10222294 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 10222295 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 10222328 >seq71 Length=10149521 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||||| | Sbjct 1782288 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1782229 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1782228 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1782169 Query 37318 CTAC 37321 | || Sbjct 1782168 CCAC 1782165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592304450194720