Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq58 143 2e-29 seq83 138 9e-28 seq46 104 2e-17 seq28 102 7e-17 seq4 100 2e-16 >seq58 Length=13669011 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 13148014 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 13147955 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 13147954 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13147895 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || |||||||| || || |||||||| Sbjct 13147894 ACGTAGAACTGGCAAAGGGCATGGCACGGGGGTAGGGCCATGAG 13147851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 13144800 CATCTCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 13144741 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 13144740 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 13144681 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 13144680 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 13144633 >seq83 Length=9572586 Score = 138 bits (152), Expect = 9e-28 Identities = 350/525 (67%), Gaps = 12/525 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| || | || | || ||||| | |||||| | || | ||||||||||| Sbjct 1005479 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 1005537 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || ||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 1005538 AAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 1005597 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||||| ||||| || | |||||||||||||| |||| || | || ||| || Sbjct 1005598 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCCGT 1005657 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || ||||||||||| ||||| || || || || || ||||||| || || || | Sbjct 1005658 CTCCTGACCTCTGGTACAGCTG-CAGGACAG-TCATGGTTCATCACGTAGAAGTGGCAAA 1005715 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAG------GCCCAAGTCTTTGGGGTTCCAGGCGC 30058 || |||||| | || || | || | | ||| || | ||||| || | Sbjct 1005716 GGGCATGGCACAGGGGCAGGGTGGTGGGGTATGAGAGGAAGATCTTACGATTCCAAGCAC 1005775 Query 30059 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30118 | ||||| | |||||||| |||||| | |||| ||| | | |||||||| | Sbjct 1005776 GTAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTT 1005835 Query 30119 GATCCACCCCCATCCCCGAGT-AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 | || || || || || | | | | || || |||| | || | ||| || Sbjct 1005836 GGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTTGGCCACCAAAAGC 1005895 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAAGCCCCT 30236 |||||||| || | || || | || | || || ||||| || ||| | || Sbjct 1005896 CTCCACTGAAAGCTATAAACTAGGCCTAAATCCCCTTCTTCTCTGGTGGAGGGTACCAGG 1005955 Query 30237 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 | ||||||| ||||||| ||| |||| ||| |||||||| || || Sbjct 1005956 C-TGTCCAAGAAGTCTCGGGACCCGTAGGCATCCCAGATTTTCAC 1005999 >seq46 Length=11947515 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 6164774 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 6164833 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||| | || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 6164834 TAAAGGTCGATTCGTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 6164893 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 6164894 CTGTTTACCTTCTACTGAAGAAGTTGTGGTCA 6164925 >seq28 Length=22384124 Score = 102 bits (112), Expect = 7e-17 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || | || || || ||||| |||| || || ||||| | Sbjct 15516655 ATGAGCTCCCTGTGGAGGTTCCGTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 15516714 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 15516715 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATT 15516774 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || | ||||| | | || | || | || || | Sbjct 15516775 CTGTTTCCCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACTTGTATTCGTTCCT 15516834 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 112313 || || ||| |||| ||||| || ||||| || | |||||||||| ||||| Sbjct 15516835 GAG---CG-AGG--GCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG 15516883 >seq4 Length=32345528 Score = 100 bits (110), Expect = 2e-16 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 27012270 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27012211 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || | |||||||||||||| || |||||||| ||||||| || Sbjct 27012210 TAATGGTCGATTCTTCTCTGAAATGGAGAACCAAGTTTTCCTACCCATAATCACCAAATT 27012151 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || | ||||| | | || | | | || || | Sbjct 27012150 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCT 27012091 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 112317 || || |||| ||||| || ||||| || | |||||||||| ||| |||||| Sbjct 27012090 GAG------CGGGGGCCAGGGCAGGTCCCCGTTCTTGCAGATGCCCATGTTCTGGGACAC 27012037 Query 112318 A 112318 | Sbjct 27012036 A 27012036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609293314964