Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 3e-16 seq133 89.7 1e-13 seq74 80.6 7e-11 >seq4 Length=32345528 Score = 98.7 bits (108), Expect = 3e-16 Identities = 192/277 (69%), Gaps = 20/277 (7%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 14664674 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 14664615 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | |||||||| |||||||| || ||| ||| | ||| || || |||| |||||| | | Sbjct 14664614 TAGATGTGGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGTTGTTGTACTGT 14664555 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGG-TGATAGGATTGCTCAGTTA 1133 |||||||| || || ||| ||| | | || ||| |||| | ||||| ||| | Sbjct 14664554 TTAATTTTGGCAAAGAAAAG----TTCGAAGTCAAAAAGGGTGATCGAATTGCACAGCTC 14664499 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTCC----TTAGAGGAT 1187 ||||||||| || | |||| || || |||||| ||| ||| ||||| || Sbjct 14664498 ATTTGTGAAC-GGATATTTTACC---CAG--AAATAGAGGAAGTTCAAGTTTTAGATGAC 14664445 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 14664444 ACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 14664408 >seq133 Length=6119822 Score = 89.7 bits (98), Expect = 1e-13 Identities = 190/277 (69%), Gaps = 20/277 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| |||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 1720517 TTCCTAATGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 1720576 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 1720577 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 1720636 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTA 1133 |||||||| || || ||| ||| | | || | |||||| | ||||| ||| | Sbjct 1720637 TTAATTTTGGCAAAGAAAAG----TTCGAAGTCAAAAAGGGTGATGGAATTGCACAGCTC 1720692 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGAT 1187 ||||||| || | | |||| | ||| |||||| ||| ||| ||||| || Sbjct 1720693 ATTTGTG-AACGTATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGAC 1720746 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||| ||| | ||| ||||| || || |||| Sbjct 1720747 ACTGAAAGGGATTCAGGAGGTTTTGGATCCACTGGAA 1720783 >seq74 Length=11690531 Score = 80.6 bits (88), Expect = 7e-11 Identities = 177/263 (67%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| || || || || || || | | | Sbjct 9996078 TTCCTTCTGGGTGCTATGGGAGACTAGCTCCACATTCTGGTTTGGCTGCAAAATACTTCA 9996019 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || | | ||| | || || || ||||||||| | | | Sbjct 9996018 TAGATGTAGGGGCTGGTGTCATAGCTGAAGATTACAGAGGAAATGTTGGTGTTCTACTGT 9995959 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGG-TGATAGGATTGCTCAGTTAATT 1136 |||||||| || | || | || | | || ||| |||| | ||||| ||| | ||| Sbjct 9995958 TTAATTTTGGCAA--AG----TCCAAAGTCAAAAAGGGTGATGGAATTGCACAGCTCATT 9995905 Query 1137 TGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGG 1196 |||||| | | ||| ||| || || ||| | ||||| ||| | |||||| Sbjct 9995904 TGTGAATGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGTTTTAGATGATGCTGAAAGG 9995845 Query 1197 GGTTCTGCAGGATTTGGGTCTAC 1219 ||||| | ||| ||||| || || Sbjct 9995844 GGTTCAGGAGGTTTTGGTTCCAC 9995822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138678853064208