Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 seq24 87.8 1e-12 seq33 86.0 5e-12 seq27 84.2 2e-11 >seq10 Length=27321270 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || ||||| || ||||| || | ||| | |||| |||| ||| Sbjct 23648176 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACGTCCATCTTCCACTTG 23648231 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | || || || || ||||| ||||| ||||| || || || Sbjct 23648232 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 23648291 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 |||||| ||||| || || || | ||| ||||||||||||| Sbjct 23648292 GGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGA 23648338 >seq24 Length=21601121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || |||| ||| | || | || |||||||| ||||| || || |||||||| | Sbjct 9816206 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 9816147 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 ||||| | | |||| |||| || || |||||||| || | | ||| || ||||| ||| Sbjct 9816146 ATAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAACATGAGCCTCTGCTGGTCGGGGGGA 9816087 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 ||||||||||||| || || || Sbjct 9816086 -TGCCTTCTTTATCCTGGATCTT 9816065 >seq33 Length=16598743 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| || | || ||||| || ||||| || | | ||| | ||| Sbjct 8627167 AACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATTT 8627108 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||| |||||| || ||||| |||| | || || || || ||||| ||||| || || Sbjct 8627107 TCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAGGAATTCCTTCCTTGTCC 8627048 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| || || || | || || || ||||||| || Sbjct 8627047 TGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTGATGGTC 8626988 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || ||||||||||| Sbjct 8626987 TTCCCCGTCAGGGTCTTCACGAATATCTGCAT 8626956 >seq27 Length=17078927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335 || || ||||| || ||||| || | | ||| | |||| |||| |||||| || ||| Sbjct 16539941 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCA 16540000 Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || |||| | || || || || || || |||||||||||||| || || |||||| Sbjct 16540001 AAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACA 16540060 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 |||||| || || || | ||| || | ||||||| || || || || | || || Sbjct 16540061 TTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTC 16540120 Query 101456 ACAAATATCTGCAT 101469 || |||||||| Sbjct 16540121 CTGAAAATCTGCAT 16540134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270344155476