Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq92 174 3e-38 seq82 105 1e-17 seq59 93.3 8e-14 >seq92 Length=12121002 Score = 174 bits (192), Expect = 3e-38 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| || | Sbjct 7091576 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGCTCGC 7091635 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || | | || || ||||||| || ||||| || | |||||| |||||| || | Sbjct 7091636 GGAGGAGGCCGGCAGTGCTGGACAGCCCGGCGTTCTCGGCCTTGAGTGTCTTCACCTTGT 7091695 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| |||| Sbjct 7091696 CCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCGGT 7091755 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || | ||| || || | |||||||| |||||||| ||||||| ||| || ||| Sbjct 7091756 TCCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 7091814 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 9117585 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 9117526 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 9117525 TCCGTGTTCTGACTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 9117466 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||| Sbjct 9117465 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 9117406 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 9117405 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 9117373 >seq82 Length=8814989 Score = 105 bits (116), Expect = 1e-17 Identities = 197/286 (69%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 48091 CTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150 ||| || |||||| ||||||| ||| | | || |||||||||||| | ||| || Sbjct 1281296 CTCCGAACGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAGGCAAAGTCACAGTGTAA 1281352 Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210 || ||||| | ||| || || | ||||| || ||| || | ||||| || | | Sbjct 1281353 ACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACATGAGTCCTCGTTT 1281412 Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 |||||||| || | | || ||||| ||||| |||||||| || ||| |||| || || Sbjct 1281413 CTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGGCAAA 1281472 Query 48271 CGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGT 48329 || || | |||||| | | ||| | |||||| ||||| | | ||| ||||| | Sbjct 1281473 GGCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCGCAAG-GCCCAAT 1281531 Query 48330 CTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||||| |||||| | | |||| ||||| |||| |||||| Sbjct 1281532 CTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAG 1281577 >seq59 Length=12930228 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 1581382 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 1581323 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 1581322 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 1581263 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 1581262 ATGGGGGAC 1581254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513377541120