Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq27 111 3e-19 seq259 98.7 2e-15 seq33 98.7 2e-15 seq10 98.7 2e-15 seq53 87.8 4e-12 seq265 86.0 1e-11 >seq27 Length=17078927 Score = 111 bits (122), Expect = 3e-19 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || | |||| |||| ||| || |||||||||| Sbjct 16539946 CTTTTGA-ATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 16540004 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || ||||| || ||||||||||||||||| || || |||||||| Sbjct 16540005 TCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACATTTT 16540064 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || | ||||| ||||| || || || | || || | | Sbjct 16540065 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCCTGA 16540124 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 16540125 AAATCTGCATCTT 16540137 >seq259 Length=1197011 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAG-CCTCTTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | || |||| || || || | ||| Sbjct 605932 ACCACCACGAAGTCTCAACACAATATGAAGAGTGGACCCCTTTTGA-ATGTTGTGGTCAA 605874 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | |||||| || ||||| | Sbjct 605873 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGGG 605814 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 |||||||| || || || || ||| |||||||| | | | ||| || | ||| | Sbjct 605813 AAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCTTTTGTATCCGAGGGTTCAA 605754 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | || ||||| ||||| || || || | || || | || ||||||| Sbjct 605753 CCTCGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 605707 >seq33 Length=16598743 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || || | ||| | ||| | ||| ||| || || || || ||||| Sbjct 8627182 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGA-ATGTTGTAGTCAGA 8627124 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || ||| ||| ||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 8627123 CAGAGTACGTCCATTTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAGG 8627064 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || || || || || |||||||| ||| | ||| || | || || Sbjct 8627063 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTTGAC 8627004 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | ||||||||||| || Sbjct 8627003 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAATATCTGCATATT 8626953 >seq10 Length=27321270 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 23648209 AAAGTACGTCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 23648268 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| ||||| || || || |||||||| | | | |||||| | ||| ||| Sbjct 23648269 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACT 23648328 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 || ||||| ||||| | || | || || || || || ||||||| Sbjct 23648329 TCAAGAGTGATGGTCATCCCTG-GAAGGTCTTCATGAAAATCTGCA 23648373 >seq53 Length=16102195 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || | |||| Sbjct 15465275 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTGGTCAG 15465333 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || || ||||||||||| | ||| || || ||||| | Sbjct 15465334 ACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 15465393 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||| |||| || || || || || |||| || | | | ||| || | ||| | Sbjct 15465394 GAATTACTTCCTTGTCCTGGATCTTGGCCTTTATGTTTTCTGTTGTATCCGAGGGTTCGA 15465453 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | || |||||||| || Sbjct 15465454 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 15465505 >seq265 Length=2252016 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| | Sbjct 744452 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 744393 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || || || |||||||| | | | ||| || | ||| || || ||||| | Sbjct 744392 TGTCCTGGATCTTGACCTTTACATTTTCTGTCGTATCCGAGGGTTCGACCTCGAGAGTGA 744333 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || || || | || || | ||| |||||||| || Sbjct 744332 CGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATATT 744293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984458960431800