Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq27 116 3e-21 seq53 113 4e-20 seq33 111 1e-19 seq84 107 2e-18 seq61 91.5 1e-13 seq259 89.7 5e-13 seq20 89.7 5e-13 seq10 89.7 5e-13 >seq27 Length=17078927 Score = 116 bits (128), Expect = 3e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || || ||| | || ||| | | Sbjct 16540135 GATGCAGATTTTCAGGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTC 16540076 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||||||||| ||||||||||| ||||| || || Sbjct 16540075 AGATACAATAGAAAATGTAAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCTGACCA 16540016 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 ||| | |||||||||| || || || |||||||| | | | || |||| || || | Sbjct 16540015 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAGGA-TGGCCATACTTTGTCTGACTACA 16539957 Query 24882 ACATTCAAAAGGAATC 24897 ||||||||||||| || Sbjct 16539956 ACATTCAAAAGGAGTC 16539941 >seq53 Length=16102195 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || ||| || | Sbjct 15465502 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 15465443 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| ||||| |||| |||||||| ||||| |||| ||| ||||| || || Sbjct 15465442 GATACAACAGAAAACATAAAGGCCAAGATCCAGGACAAGGAAGTAATTCCTCCTGACCAG 15465383 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || |||||||| ||| | | |||| || | ||| Sbjct 15465382 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACCACAAC 15465323 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 15465322 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 15465276 >seq33 Length=16598743 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || || || | Sbjct 8626956 ATGCAGATATTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAACCCTCG 8627015 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| |||||||| ||||| |||||||| ||||| || || Sbjct 8627016 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAC 8627075 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || | ||| || | | |||| || || ||| Sbjct 8627076 CAAAGACTGATCTTTGCTGGCAAGCAACGGGAAAATGGACGTACTCTGTCTGACTACAAC 8627135 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||||||||| | || || || | |||||| || | || || |||| Sbjct 8627136 ATTCAAAAGGAGCCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGCG 8627184 >seq84 Length=11797838 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || ||||| || || || || || || || || Sbjct 5419535 ACAATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCC 5419594 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||| ||||| || || || || || Sbjct 5419595 AGTGACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGAC 5419654 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||||||||||||||||| ||| | | | | |||| || || Sbjct 5419655 CAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 5419714 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 5419715 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 5419746 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || | || || || ||| Sbjct 5420596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 5420655 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 5420656 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 5420715 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||||||||||||||| ||| | | | | |||| || || ||| Sbjct 5420716 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5420775 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||| |||| |||| || | ||||| Sbjct 5420776 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTAAGGGGAGG 5420822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || ||||| || || || || || || | ||||||||||||||||| Sbjct 5420452 AAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 5420511 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | || ||||| ||||| || || || ||||| || ||| Sbjct 5420512 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 5420571 Query 24908 TTGGT 24912 |||| Sbjct 5420572 CTGGT 5420576 >seq61 Length=12256116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||||| || | | || || || || | || ||||| || ||| || | Sbjct 4027449 GATGCAGATTTTTATGAAGATCCGGACAGGGAAGACCACCACTCTCGAGGTCGAACCCTC 4027390 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||||||||| || |||| ||| ||| | || || Sbjct 4027389 AGATACAATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTGACCA 4027330 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | | | | | |||||| || || || ||||| ||| | | |||| || || || Sbjct 4027329 GCGAAGACTAACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 4027270 Query 24883 CATTCAAAAGGAATCGAC 24900 |||||||||||| || || Sbjct 4027269 CATTCAAAAGGAGTCTAC 4027252 >seq259 Length=1197011 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| || | || || || || || || || || || ||||| || ||| || | | Sbjct 605707 TGCAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCGAGGTTGAACCCTCGG 605765 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | ||| ||||| ||||| |||||||| ||||| |||||||| | || || || | Sbjct 605766 ATACAAAAGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 605825 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 | | |||||||||| || || || ||||| ||| | | ||| || | |||| Sbjct 605826 AGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTTTGACCACAACA 605885 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || | |||||| || | || || || Sbjct 605886 TTCAAAAGGGGTCCACTCTTCATATTGTGTTGAGACTTCGTGGTGG 605931 >seq20 Length=22150888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 5019531 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 5019590 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 5019591 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 5019650 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || ||||||||||| ||| | | | || ||||| ||| Sbjct 5019651 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 5019710 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 5019711 ATCCAGAAAGAGTCGACCCTGCACCTGGT 5019739 >seq10 Length=27321270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| || || || || || | || | || || || || ||||| ||| || | | Sbjct 23648373 TGCAGATTTTCATGAAGAC-CTTCCAGGGATGACCATCACTCTTGAAGTTGAACCCTCAG 23648315 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | ||| ||||| ||||| |||||||| || || |||||||| ||||| || || | Sbjct 23648314 ATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 23648255 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 || | |||||||||| || || || |||| ||| || || | || || |||| Sbjct 23648254 AAAGACTGATCTTTGCTGGCAAGCAAGTGGAAGATG-GACGTACTTT---GACTACAACA 23648199 Query 24885 TTCAAAAGGAATCGACACTACA-CTTGGTGTTGCGA 24919 |||||||||| || || || || ||| ||||| || Sbjct 23648198 TTCAAAAGGAGTCCACTCTTCATCTTAATGTTGAGA 23648163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888219635040