Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq84 122 7e-23 seq33 102 6e-17 seq53 93.3 3e-14 seq27 93.3 3e-14 seq10 91.5 1e-13 seq259 86.0 5e-12 seq166 86.0 5e-12 seq20 86.0 5e-12 >seq84 Length=11797838 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| || ||||| |||| || || ||||||||||| || ||||| || || | Sbjct 5420822 CCTCCCCTTAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 5420763 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 5420762 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 5420703 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||| | || || Sbjct 5420702 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 5420643 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || |||||||| ||||| || || || |||||||| Sbjct 5420642 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 5420596 >seq33 Length=16598743 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| |||| || ||||||||||| || || | | || || || Sbjct 8627168 CAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATT 8627109 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||| ||||||||| | |||| |||||| || || || ||||| || || ||||| Sbjct 8627108 TTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAGGAATTCCTTCCTTGTC 8627049 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || ||| || || ||||| || || Sbjct 8627048 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTGATGGT 8626989 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || ||||||||||| || Sbjct 8626988 CTTCCCCGTCAGGGTCTTCACGAATATCTGCATATT 8626953 >seq53 Length=16102195 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| | || | | || || ||| Sbjct 15465290 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTGGTCAGACAAAGTACGTCCATC 15465349 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| ||||||||| || || ||||| | || ||||| Sbjct 15465350 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTACTTCCTTGTC 15465409 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || | ||||| || || || |||| || || ||||| || || Sbjct 15465410 CTGGATCTTGGCCTTTATGTTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 15465469 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 15465470 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 15465505 >seq27 Length=17078927 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 29591 TGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAG 29650 |||| || ||||||||||| || || | | || | ||| || ||||| ||||||| Sbjct 16539939 TGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAG 16539998 Query 29651 CATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGA 29710 || | |||| ||||||||| || || || || || ||||| ||||| | || || | Sbjct 16539999 CAAAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTA 16540058 Query 29711 CAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTT 29770 || |||||| || || ||| |||| || | ||||| || || || || || | ||| | Sbjct 16540059 CATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCT 16540118 Query 29771 TAACAAATATCTGCATTTT 29789 | || |||||||| || Sbjct 16540119 TCCTGAAAATCTGCATCTT 16540137 >seq10 Length=27321270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || || || || ||| || | ||| Sbjct 23648176 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA--AA--GTACGTCCATCTTCCACTTG 23648231 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || ||||| || || || || || | || Sbjct 23648232 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 23648291 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||| || || || |||| ||||||||||| || || | || | Sbjct 23648292 GGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGATGGTCATCCCTG- 23648350 Query 29763 TAAGGTTTTAACAAATATCTGCA 29785 ||||| || | || ||||||| Sbjct 23648351 GAAGGTCTTCATGAAAATCTGCA 23648373 >seq259 Length=1197011 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| | ||||||||||| | || | || || ||| Sbjct 605917 CAACACAATATGAAGAGTGGACCCCTTTTGAATGTTGTGGTCAAACAAAGTACGTCCATC 605858 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| ||||| || || | ||| || || ||||| Sbjct 605857 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGGGAAATTCCTTCCTTGTC 605798 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| || || || |||| || || ||||| || || Sbjct 605797 CTGGATCTTAGCCTTTACATTTTCTTTTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 605738 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 || || || | ||| || || || ||||||| Sbjct 605737 CTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 605707 >seq166 Length=5848183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||| || || ||||||||||| || || ||||| || | | || || ||| Sbjct 1459266 AGCACCAAGTGTAGGGTGGATTCTTTCTGGATATTATAGTCTGAGAGAGTACGGCCATCC 1459207 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || |||||| | ||| | |||| || || || | ||| | || |||| ||||| Sbjct 1459206 TC-AGCTGTTTGTCTGCAAAAATCAGACTCTGTTGGTGAGGCAGGATGTCCTCAGTGTCT 1459148 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 | | ||||| | ||||||| | || ||| || |||| || |||||||| || || Sbjct 1459147 T-TGATTTTGGCTTTGACATTCTCAGTGGTGACACTGAGTTTGACCTCAAGAGTGATGGT 1459089 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 ||||| || | ||| || ||||| || ||| Sbjct 1459088 CTTGCCCGTCAGGGTCTTCACAAAGATTTGC 1459058 >seq20 Length=22150888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||||| ||||| | Sbjct 5019757 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 5019698 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || |||||||| ||| | || | || ||||| || || || Sbjct 5019697 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 5019638 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | |||||| | || || Sbjct 5019637 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 5019578 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 5019577 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 5019528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211368975188