Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq84 284 1e-71 >seq84 Length=11797838 Score = 284 bits (314), Expect = 1e-71 Identities = 502/724 (69%), Gaps = 62/724 (9%) Strand=Plus/Minus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| ||||||||||||||||||| ||||||| |||| || | | | |||||||| Sbjct 7522223 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGGCTTCTTCTGGGGGCAATGGAAGGCA 7522165 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGTT 1190 ||||||||||| ||||||||||| |||||| | |||||||||| || || | || |||| Sbjct 7522164 TTTTAAAGAAATGGCTTAGAAAAGAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGTT 7522105 Query 1191 TTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG----T 1246 | ||| ||| || ||| ||| |||||| || | |||| | || || ||| | Sbjct 7522104 TCTCAAACGAGGACCGTAATTCCTTGATTATAGATTGTTGTTTATCTGGTCCTAGCACAT 7522045 Query 1247 GGATGGCCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCC 1304 | |||| |||||||| ||||||||||| |||| ||| |||||||||||||||| || Sbjct 7522044 AGGGTGCCGTATGGGAGGACAGCAAGGCTCCCGAACGGCACAGCAGGAACAGGGCAAACC 7521985 Query 1305 CTGAAGATTTTGTAAAAATAGAGTAATGC---------------CCACACACCCCCACCT 1349 | |||| || | ||| || || |||| ||||||||||| || Sbjct 7521984 TGGCAGATCCTGGAGAAAGAGGGTGATGCCGGGAGGAGCAGAGGCCACACACCCCAGCC- 7521926 Query 1350 GCCCCATACCTTAACCTGC-CCAAGCTTTCACCACCGAAGCTGTGCCG-GACTGAGCCCC 1407 |||| || || || ||||| ||| ||| | || || | | ||||||||| Sbjct 7521925 -CCCCCCGCCCCCACTGGCTTCAAGCGCTCA-AGCCGTTGTTGAGCAGTGGCTGAGCCCC 7521868 Query 1408 ATCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTA 1467 ||||||||| |||| ||||| | || | | || | ||| | ||| | Sbjct 7521867 -TCCAGTCTTCCTCTATGTCTGGTGAGATCCAACTGTGCCCCGC---------GGCCGCG 7521818 Query 1468 GGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGC 1527 | ||| | |||||| | |||| || | || |||||||||||| || |||| || Sbjct 7521817 GCACCCTGTGGTACCTGCGTGGGAGACCGTGGCGGGAGAGAGCGAG---GCTGCTTCAGC 7521761 Query 1528 AACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTA 1587 |||||| || ||| |||||||||||| | | || ||| | |||||||||||| | Sbjct 7521760 AACAGCCCCTGGAGCCAGATGTGCTCGCCGTGGTCTTCAGGAGC--TATATAAAGGGCCA 7521703 Query 1588 GTTGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------C 1636 | | |||| || |||| || || |||| || ||| |||||||| | Sbjct 7521702 ATGGCGAGGAAGATCACT----GTCCCACCCATGGCAAAATCATTACTCAGCTTTTTCCC 7521647 Query 1637 AGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA- 1694 |||||||| ||||||| | ||||| | | ||| | |||||| |||| |||||||| Sbjct 7521646 AGAAAACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGAAGGAAAT 7521587 Query 1695 --TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACC 1752 ||| |||||||| ||| |||||||| || ||| || | || ||||||| | ||||| Sbjct 7521586 GCTGAGGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGGCACA 7521528 Query 1753 CACA 1756 |||| Sbjct 7521527 CACA 7521524 Score = 143 bits (158), Expect = 2e-29 Identities = 238/339 (70%), Gaps = 16/339 (5%) Strand=Plus/Minus Query 428 TGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTGTCTGTAGGCAT 487 ||||||| ||| |||| | || ||||| ||| || | |||| ||||| |||| Sbjct 7523764 TGAAAACTTTTTAAAAATAGACACGATGAAGCTTTTACATTTAAAGCTATCTGTGGGCAC 7523705 Query 488 AGAAA------TGTCTGGTGCGCGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATC 541 ||||| | |||||| | || | || || ||||| |||||||||| |||| | Sbjct 7523704 AGAAACTTTTGTTTCTGGTTCATGTCGAAACTCGAGTTTACTGAGATGGTCTATGAGGGC 7523645 Query 542 AGTAAAACT--ATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAAGGCAGGATG 599 | | |||| | | ||| || |||| || |||||| ||||| ||||||||| | || Sbjct 7523644 A--ACAACTTGAGCTTTGTTATCGAAAAGTGGTTTGATCGCTCTGCAATAAGGCAAGGTG 7523587 Query 600 GCTGAACTGTTGATGTTGTGTGGTGGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCAC 659 ||||| |||| |||||||| ||| | |||||| ||| || || ||| |||| || || Sbjct 7523586 GCTGAGCTGTCGATGTTGTATGGCAGTTGGGGGTTCAGAGTGAAACACGGCATCTGGTAC 7523527 Query 660 GTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGGAAGGAGA--GGAAA-T 716 || |||| | ||| | ||||| ||||| ||||| ||||| ||||| | Sbjct 7523526 TGGCTGGATTCCGGCACTCCGCT---CTCTTCCTGCTGCTGTGTGAGGAGGAGGGAAAGT 7523470 Query 717 GGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCCTGA 755 |||||||||||||| ||| ||| ||| |||||| || || Sbjct 7523469 GGGTGAGCATTAGTTTTGCAAAACAGCCAGAAATCCCGA 7523431 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/114 (79%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 166 CCACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTT 225 |||||||||| || |||||||| ||| |||||||| || ||| |||||||||||| ||| Sbjct 7524453 CCACACACAAAATGCAAAACAGAGTATGAGAAAAAT-CAATATCATTTATTAAATAGTTT 7524395 Query 226 TCAAGGGCTTCTTTAAGAAGCATTAACAATCTAACAACATTTTATAAATAACAA 279 |||| ||| || ||| | |||||||||||| | || | ||||||| ||| Sbjct 7524394 CCAAGCGCTCCTCCAAGGACCATTAACAATCTCA----ATATGATAAATATCAA 7524345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438550856024000